Barrier crossing in a viscoelastic medium under active noise: Predictions of Kramers' flux-over-population method.

IF 3.1 2区 化学 Q3 CHEMISTRY, PHYSICAL Journal of Chemical Physics Pub Date : 2024-07-07 DOI:10.1063/5.0212289
Binny J Cherayil
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Abstract

The biochemical activity inside a cell has recently been suggested to act as a source of hydrodynamic fluctuations that can speed up or slow down enzyme catalysis [Tripathi et al., Commun. Phys. 5, 101 (2022).] The idea has been tested against and largely corroborated by simulations of activated barrier crossing in a simple fluid in the presence of thermal and athermal noise. The present paper attempts a wholly analytic solution to the same noise-driven barrier crossing problem but generalizes it to include viscoelastic memory effects of the kind likely to be present in cellular interiors. A calculation of the model's barrier crossing rate, using Kramers' flux-over-population formalism, reveals that in relation to the case where athermal noise is absent, athermal noise always accelerates barrier crossing, though the extent of enhancement depends on the duration τ0 over which the noise acts. More importantly, there exists a critical τ0-determined by the properties of the medium-at which Kramers' theory breaks down and, on approach to which, the rate grows significantly. The possibility of such a giant enhancement is potentially open to experimental validation using optically trapped nanoparticles in viscoelastic media that are acted on by externally imposed colored noise.

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主动噪声下粘弹性介质中的障碍穿越:克拉默通量溢出法的预测。
细胞内的生化活动最近被认为是流体动力波动的来源,它可以加速或减慢酶的催化过程[Tripathi 等人,《通讯物理学》5,101(2022 年)]。在热噪声和热噪声存在的情况下,对简单流体中的活化越障进行模拟,检验并在很大程度上证实了这一观点。本文尝试用完全解析的方法来解决同样的噪声驱动的越障问题,但将其扩展到包括粘弹性记忆效应,即细胞内部可能存在的那种记忆效应。利用克拉默的通量-种群形式主义对模型的越障率进行计算后发现,与不存在热噪声的情况相比,热噪声总是加速越障,尽管增强的程度取决于噪声作用的持续时间τ0。更重要的是,存在一个由介质特性决定的临界τ0,在这个临界点上,克拉默理论会崩溃,而在接近这个临界点时,速率会显著增长。利用粘弹性介质中光学捕获的纳米粒子,在外部施加的彩色噪声作用下,这种巨大增强的可能性有可能得到实验验证。
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来源期刊
Journal of Chemical Physics
Journal of Chemical Physics 物理-物理:原子、分子和化学物理
CiteScore
7.40
自引率
15.90%
发文量
1615
审稿时长
2 months
期刊介绍: The Journal of Chemical Physics publishes quantitative and rigorous science of long-lasting value in methods and applications of chemical physics. The Journal also publishes brief Communications of significant new findings, Perspectives on the latest advances in the field, and Special Topic issues. The Journal focuses on innovative research in experimental and theoretical areas of chemical physics, including spectroscopy, dynamics, kinetics, statistical mechanics, and quantum mechanics. In addition, topical areas such as polymers, soft matter, materials, surfaces/interfaces, and systems of biological relevance are of increasing importance. Topical coverage includes: Theoretical Methods and Algorithms Advanced Experimental Techniques Atoms, Molecules, and Clusters Liquids, Glasses, and Crystals Surfaces, Interfaces, and Materials Polymers and Soft Matter Biological Molecules and Networks.
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