Ab initio investigation of the geometrical behavior in solution and electronic structure of the anion complexes [bis(1,3-dithiole-2-thione-4,5-dithiolate)M], for M = Bi(III), Sb(III), and Zn(II).

IF 2.1 4区 化学 Q4 BIOCHEMISTRY & MOLECULAR BIOLOGY Journal of Molecular Modeling Pub Date : 2024-07-08 DOI:10.1007/s00894-024-06052-6
Heloisa N S Menezes, Henrique C S Júnior, Glaucio B Ferreira
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引用次数: 0

Abstract

Context: 1,3-Dithiole-2-thione-4,5-dithiolate (dmit) ligands are known for their conductive and optical properties. Dmit compounds have been assessed for use in sensor devices, information storage, spintronics, and optical material applications. Associations with various metallic centers endow dmit complexes with magnetic, optical, conductive, and antioxidant properties. Optical doping can facilitate the fabrication of magnetic conductor materials from ground-state nonmagnetic cations. While most studied complexes involve transition-metal centers due to their diverse chemistry, compounds with representative elements are less explored in the literature. This study investigated the structural and electronic properties of bisdmit complexes with representative Bi(III), Sb(III), and Zn(II) cations. AIMD calculations revealed two new geometries for Bi(III) and Zn(II) complexes, diverging from the isolated geometry typically used in quantum chemical calculations. The coordination of acetonitrile molecules to the cationic centers of the complexes resulted in unstable structures, while the dimerization of the complexes was stable. SA-CASSCF/NEVPT2 calculations were applied to the structures of the isolated complexes and stable dimers, confirming the multireference character of the electronic structure of the three systems and the multiconfigurational character of the Bi(III) complex. The electronic spectra simulated by the STEOM-DLPNO-CCSD calculations accurately reproduced the experimental UV‒Vis spectra indicating the participation of the isolated Bi(III) dmit complex and its dimeric form in solution.

Methodology: AIMD calculations of the dmit salts were conducted using the GFN2-xTB method with 60 explicit acetonitrile molecules as the solvent at 300 K for a total simulation time of 50.0 ps, with printing intervals of 0.5 fs. The final geometries were optimized employing the PBEh-3c compound method, incorporating implicit conductor-like polarizable continuum model (CPCM) solvation for acetonitrile. Local energy decomposition (LED) analysis at the DLPNO-CCSD(T)/Def2-TZVP level of theory was utilized to investigate the stability of the complex geometries identified by AIMD. The electronic structures of the complexes were assessed using the SA-CASSCF/NEVPT2/Def2-TZVP method to confirm the multiconfigurational and multireference nature of their electronic structures. Electronic spectra were analyzed using the STEOM-DLPNO-CCSD/Def2-TZVP method, with CPCM used to simulate an acetonitrile medium.

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针对 M = Bi(III)、Sb(III) 和 Zn(II),对阴离子配合物 [双(1,3-二硫代-2-硫酮-4,5-二硫酸盐)M] 在溶液中的几何行为和电子结构进行了 Ab initio 研究。
背景:1,3-二硫代-2-硫酮-4,5-二硫酸盐(dmit)配体因其导电和光学特性而闻名。经评估,dmit 复合物可用于传感器件、信息存储、自旋电子学和光学材料等领域。与各种金属中心的结合赋予了 dmit 复合物磁性、光学、导电性和抗氧化性。光学掺杂可促进利用基态非磁性阳离子制造磁导体材料。由于过渡金属中心的化学性质多样,大多数研究的复合物都涉及过渡金属中心,但文献中对具有代表性元素的化合物的探讨较少。本研究调查了具有代表性的 Bi(III)、Sb(III) 和 Zn(II) 阳离子的双米配合物的结构和电子特性。AIMD 计算揭示了 Bi(III) 和 Zn(II) 复合物的两种新几何结构,与量子化学计算中通常使用的孤立几何结构不同。乙腈分子与配合物阳离子中心的配位导致了不稳定的结构,而配合物的二聚化则是稳定的。SA-CASSCF/NEVPT2 计算适用于分离的配合物和稳定的二聚物的结构,证实了这三个系统的电子结构的多参考特性以及 Bi(III) 配合物的多构型特性。STEOM-DLPNO-CCSD 计算模拟的电子能谱准确再现了实验紫外可见光谱,表明分离的 Bi(III)dmit 复合物及其二聚体形式参与了溶液中的实验:使用 GFN2-xTB 方法对二米特盐进行了 AIMD 计算,以 60 个显式乙腈分子为溶剂,在 300 K 温度下进行,总模拟时间为 50.0 ps,打印间隔为 0.5 fs。最终的几何形状采用 PBEh-3c 复合方法进行了优化,将隐式导体样极化连续体模型 (CPCM) 溶剂纳入乙腈。利用 DLPNO-CCSD(T)/Def2-TZVP 理论水平的局部能量分解(LED)分析,研究了 AIMD 确定的复合物几何结构的稳定性。使用 SA-CASSCF/NEVPT2/Def2-TZVP 方法评估了复合物的电子结构,以确认其电子结构的多构型和多参考性质。使用 STEOM-DLPNO-CCSD/Def2-TZVP 方法分析了电子能谱,并使用 CPCM 模拟了乙腈介质。
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来源期刊
Journal of Molecular Modeling
Journal of Molecular Modeling 化学-化学综合
CiteScore
3.50
自引率
4.50%
发文量
362
审稿时长
2.9 months
期刊介绍: The Journal of Molecular Modeling focuses on "hardcore" modeling, publishing high-quality research and reports. Founded in 1995 as a purely electronic journal, it has adapted its format to include a full-color print edition, and adjusted its aims and scope fit the fast-changing field of molecular modeling, with a particular focus on three-dimensional modeling. Today, the journal covers all aspects of molecular modeling including life science modeling; materials modeling; new methods; and computational chemistry. Topics include computer-aided molecular design; rational drug design, de novo ligand design, receptor modeling and docking; cheminformatics, data analysis, visualization and mining; computational medicinal chemistry; homology modeling; simulation of peptides, DNA and other biopolymers; quantitative structure-activity relationships (QSAR) and ADME-modeling; modeling of biological reaction mechanisms; and combined experimental and computational studies in which calculations play a major role.
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