Crystal structure determination and analyses of Hirshfeld surface, crystal voids, inter­molecular inter­action energies and energy frameworks of 1-benzyl-4-(methyl­sulfan­yl)-3a,7a-di­hydro-1H-pyrazolo­[3,4-d]pyrimidine

Nour El Hoda Mustaphi , Amina Chlouchi , Mohamed El Hafi , Joel T. Mague , Tuncer Hökelek , Hanae El Monfalouti , Amal Haoudi , Ahmed Mazzah , M. Weil (Editor)
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Abstract

In the title mol­ecule, the pyrazolo­pyrimidine moiety is planar with the methyl­sulfanyl substituent lying essentially in the same plane, whereas the benzyl group is rotated well out of this plane giving the mol­ecule an approximate L shape.

The pyrazolo­pyrimidine moiety in the title mol­ecule, C13H12N4S, is planar with the methyl­sulfanyl substituent lying essentially in the same plane. The benzyl group is rotated well out of this plane by 73.64 (6)°, giving the mol­ecule an approximate L shape. In the crystal, C—H⋯π(ring) inter­actions and C—H⋯S hydrogen bonds form tubes extending along the a axis. Furthermore, there are π–π inter­actions between parallel phenyl rings with centroid-to-centroid distances of 3.8418 (12) Å. A Hirshfeld surface analysis of the crystal structure indicates that the most important contributions to the crystal packing are from H⋯H (47.0%), H⋯N/N⋯H (17.6%) and H⋯C/C⋯H (17.0%) inter­actions. The volume of the crystal voids and the percentage of free space were calculated to be 76.45 Å3 and 6.39%, showing that there is no large cavity in the crystal packing. Evaluation of the electrostatic, dispersion and total energy frameworks indicate that the cohesion of the crystal structure is dominated by the dispersion energy contributions.

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1-benzyl-4-(methyl-sulfan-yl)-3a,7a-di-hydro-1H-pyrazolo-[3,4-d]pyrimidine 的晶体结构测定及 Hirshfeld 表面、晶体空隙、分子间作用能和能量框架分析。
标题分子 C13H12N4S 中的吡唑并嘧啶分子是平面的,甲基硫代基基本上位于同一平面内。苄基在该平面外旋转了 73.64 (6)°,使分子近似于 L 形。在晶体中,C-H⋯π(环)相互作用和 C-H⋯S 氢键形成了沿 a 轴延伸的管状结构。此外,平行苯环之间存在 π-π 相互作用,其中心距为 3.8418 (12) Å。晶体结构的 Hirshfeld 表面分析表明,H⋯H(47.0%)、H⋯N/N⋯H(17.6%)和 H⋯C/C⋯H (17.0%)相互作用对晶体堆积的贡献最大。计算得出的晶体空隙体积和自由空间百分比分别为 76.45 Å3 和 6.39%,表明晶体堆积中不存在大型空腔。对静电、色散和总能框架的评估表明,晶体结构的内聚力主要由色散能贡献。
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来源期刊
CiteScore
1.90
自引率
0.00%
发文量
351
审稿时长
3 weeks
期刊介绍: Acta Crystallographica Section E: Crystallographic Communications is the IUCr''s open-access structural communications journal. It provides a fast, simple and easily accessible publication mechanism for crystal structure determinations of inorganic, metal-organic and organic compounds. The electronic submission, validation, refereeing and publication facilities of the journal ensure rapid and high-quality publication of fully validated structures. The primary article category is Research Communications; these are peer-reviewed articles describing one or more structure determinations with appropriate discussion of the science.
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