High-Resolution Mass Spectrometry for Human Exposomics: Expanding Chemical Space Coverage.

IF 10.8 1区 环境科学与生态学 Q1 ENGINEERING, ENVIRONMENTAL 环境科学与技术 Pub Date : 2024-07-23 Epub Date: 2024-07-10 DOI:10.1021/acs.est.4c01156
Yunjia Lai, Jeremy P Koelmel, Douglas I Walker, Elliott J Price, Stefano Papazian, Katherine E Manz, Delia Castilla-Fernández, John A Bowden, Vladimir Nikiforov, Arthur David, Vincent Bessonneau, Bashar Amer, Suresh Seethapathy, Xin Hu, Elizabeth Z Lin, Akrem Jbebli, Brooklynn R McNeil, Dinesh Barupal, Marina Cerasa, Hongyu Xie, Vrinda Kalia, Renu Nandakumar, Randolph Singh, Zhenyu Tian, Peng Gao, Yujia Zhao, Jean Froment, Pawel Rostkowski, Saurabh Dubey, Kateřina Coufalíková, Hana Seličová, Helge Hecht, Sheng Liu, Hanisha H Udhani, Sophie Restituito, Kam-Meng Tchou-Wong, Kun Lu, Jonathan W Martin, Benedikt Warth, Krystal J Godri Pollitt, Jana Klánová, Oliver Fiehn, Thomas O Metz, Kurt D Pennell, Dean P Jones, Gary W Miller
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Abstract

In the modern "omics" era, measurement of the human exposome is a critical missing link between genetic drivers and disease outcomes. High-resolution mass spectrometry (HRMS), routinely used in proteomics and metabolomics, has emerged as a leading technology to broadly profile chemical exposure agents and related biomolecules for accurate mass measurement, high sensitivity, rapid data acquisition, and increased resolution of chemical space. Non-targeted approaches are increasingly accessible, supporting a shift from conventional hypothesis-driven, quantitation-centric targeted analyses toward data-driven, hypothesis-generating chemical exposome-wide profiling. However, HRMS-based exposomics encounters unique challenges. New analytical and computational infrastructures are needed to expand the analysis coverage through streamlined, scalable, and harmonized workflows and data pipelines that permit longitudinal chemical exposome tracking, retrospective validation, and multi-omics integration for meaningful health-oriented inferences. In this article, we survey the literature on state-of-the-art HRMS-based technologies, review current analytical workflows and informatic pipelines, and provide an up-to-date reference on exposomic approaches for chemists, toxicologists, epidemiologists, care providers, and stakeholders in health sciences and medicine. We propose efforts to benchmark fit-for-purpose platforms for expanding coverage of chemical space, including gas/liquid chromatography-HRMS (GC-HRMS and LC-HRMS), and discuss opportunities, challenges, and strategies to advance the burgeoning field of the exposome.

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用于人体暴露学的高分辨率质谱仪:扩大化学空间覆盖面。
在现代 "全息"(omics)时代,人类暴露组的测量是基因驱动因素与疾病结果之间缺失的关键环节。高分辨率质谱(HRMS)是蛋白质组学和代谢组学的常规方法,因其精确的质量测量、高灵敏度、快速数据采集和更高的化学空间分辨率,已成为广泛分析化学暴露因子和相关生物大分子的领先技术。非靶向方法越来越容易获得,支持从传统的假设驱动、以定量为中心的靶向分析向数据驱动、假设生成的全化学暴露剖面分析转变。然而,基于 HRMS 的暴露组学研究遇到了独特的挑战。我们需要新的分析和计算基础设施,通过简化、可扩展和统一的工作流程和数据管道来扩大分析范围,从而进行纵向化学暴露组跟踪、回顾性验证和多组学整合,以获得有意义的健康导向推论。在本文中,我们调查了基于 HRMS 技术的最新文献,回顾了当前的分析工作流程和信息化管道,并为化学家、毒理学家、流行病学家、医疗服务提供者以及健康科学和医学领域的利益相关者提供了有关暴露组学方法的最新参考资料。我们建议努力为扩大化学空间覆盖范围的适用平台制定基准,包括气相色谱-液相色谱-质谱联用仪(GC-HRMS 和 LC-HRMS),并讨论机遇、挑战和战略,以推动暴露组这一新兴领域的发展。
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来源期刊
环境科学与技术
环境科学与技术 环境科学-工程:环境
CiteScore
17.50
自引率
9.60%
发文量
12359
审稿时长
2.8 months
期刊介绍: Environmental Science & Technology (ES&T) is a co-sponsored academic and technical magazine by the Hubei Provincial Environmental Protection Bureau and the Hubei Provincial Academy of Environmental Sciences. Environmental Science & Technology (ES&T) holds the status of Chinese core journals, scientific papers source journals of China, Chinese Science Citation Database source journals, and Chinese Academic Journal Comprehensive Evaluation Database source journals. This publication focuses on the academic field of environmental protection, featuring articles related to environmental protection and technical advancements.
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