{"title":"OQA: A question-answering dataset on orthodontic literature","authors":"Maxime Rousseau, Amal Zouaq, Nelly Huynh","doi":"10.1101/2024.07.05.24309412","DOIUrl":null,"url":null,"abstract":"Background: The near-exponential increase in the number of publications in orthodontics poses a challenge for efficient literature appraisal and evidence-based practice. Language models (LM) have the potential, through their question-answering fine-tuning, to assist clinicians and researchers in critical appraisal of scientific information and thus to improve decision-making.\nMethods: This paper introduces OrthodonticQA (OQA), the first question-answering dataset in the field of dentistry which is made publicly available under a permissive license. A framework is proposed which includes utilization of PICO information and templates for question formulation, demonstrating their broader applicability across various specialties within dentistry and healthcare. A selection of transformer LMs were trained on OQA to set performance baselines.\nResults: The best model achieved a mean F1 score of 77.61 (SD 0.26) and a score of 100/114 (87.72\\%) on human evaluation. Furthermore, when exploring performance according to grouped subtopics within the field of orthodontics, it was found that for all LMs the performance can vary considerably across topics.\nConclusion: Our findings highlight the importance of subtopic evaluation and superior performance of paired domain specific model and tokenizer.","PeriodicalId":501363,"journal":{"name":"medRxiv - Dentistry and Oral Medicine","volume":"366 1","pages":""},"PeriodicalIF":0.0000,"publicationDate":"2024-07-08","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":null,"platform":"Semanticscholar","paperid":null,"PeriodicalName":"medRxiv - Dentistry and Oral Medicine","FirstCategoryId":"1085","ListUrlMain":"https://doi.org/10.1101/2024.07.05.24309412","RegionNum":0,"RegionCategory":null,"ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"","JCRName":"","Score":null,"Total":0}
引用次数: 0
Abstract
Background: The near-exponential increase in the number of publications in orthodontics poses a challenge for efficient literature appraisal and evidence-based practice. Language models (LM) have the potential, through their question-answering fine-tuning, to assist clinicians and researchers in critical appraisal of scientific information and thus to improve decision-making.
Methods: This paper introduces OrthodonticQA (OQA), the first question-answering dataset in the field of dentistry which is made publicly available under a permissive license. A framework is proposed which includes utilization of PICO information and templates for question formulation, demonstrating their broader applicability across various specialties within dentistry and healthcare. A selection of transformer LMs were trained on OQA to set performance baselines.
Results: The best model achieved a mean F1 score of 77.61 (SD 0.26) and a score of 100/114 (87.72\%) on human evaluation. Furthermore, when exploring performance according to grouped subtopics within the field of orthodontics, it was found that for all LMs the performance can vary considerably across topics.
Conclusion: Our findings highlight the importance of subtopic evaluation and superior performance of paired domain specific model and tokenizer.