DNA metabarcoding reveals high diversity of fish and macrofaunal species in diets of little auks and other Arctic seabird species in Svalbard

Abstract

Climate change is a major concern for the future of marine Arctic food webs. Diet shifts of seabirds can be used as indicators of environmental changes such as species compositions of food webs. However, studies on diets are often laborious and costly, while research in vulnerable Arctic environments benefits from short visits for data collection that minimize disturbance to Arctic wildlife and the environment. DNA-metabarcoding techniques are rapidly developing and could be used as an effective method of monitoring diet choice of seabirds. We tested DNA-metabarcoding on seabird faeces collected during short visits of typically around 30 min at breeding colonies of black-legged kittiwake Rissa tridactyla (3 colonies), Brünnich’s guillemot Uria lomvia (2 colonies) and little auk Alle alle (3 colonies). DNA metabarcoding based on COI and 18S of a limited number of faeces samples revealed a wide spectrum of fish species and crustaceans in the diets of these species, comparable with or even exceeding diversity in diet composition found in conventional, more invasive techniques where birds are shot or caught and handled to obtain samples. While previous studies on diet choice of little auk, a crustacean specialist, mainly report small fractions of unidentified fish remains, DNA metabarcoding of faeces revealed a large variety of pelagic and benthic fish species supplementing its diet. We conclude that DNA metabarcoding of seabird faeces can be an effective attribute to diet studies supporting our understanding of changes in numbers and distribution of Arctic seabirds and their marine environment.