Effect of CO binding to P450 BM3 F393 mutants on electron density distribution in the heme cofactor

IF 3.8 2区 化学 Q2 BIOCHEMISTRY & MOLECULAR BIOLOGY Journal of Inorganic Biochemistry Pub Date : 2024-07-05 DOI:10.1016/j.jinorgbio.2024.112660
Johannes P.M. Schelvis , Zhucheng Chen , Marisa A. Messina , Jaclyn Catalano
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Abstract

Resonance Raman spectroscopy has been performed on a set of cytochrome P450 BM3 heme domains in which mutation of the highly conserved Phe393 induces significant variation in heme iron reduction potential. In previous work [Chen, Z., Ost, T.W.B., and Schelvis, J.P.M. (2004) Biochemistry 43, 1798–1808], a correlation between heme vinyl conformation and the heme iron reduction potential indicated a steric control by the protein over the distribution of electron density in the reduced heme cofactor. The current study aims to monitor changes in electron density on the ferrous heme cofactor following CO binding. In addition, ferric-NO complexes have been studied to investigate potential changes to the proximal Cys400 thiolate. We find that binding of CO to the ferrous heme domains results in a reorientation of the vinyl groups to a largely out-of-plane conformation, the extent of which correlates with the size of the residue at position 393. We conclude that FeII dπ back bonding to the CO ligand largely takes away the need for conjugation of the vinyl groups with the porphyrin ring to accommodate FeII dπ back bonding to the porphyrin ligand. The ferrous-CO and ferric-NO data are consistent with a small decrease in σ-electron donation from the proximal Cys400 thiolate in the F393A mutant and, to a lesser extent, the F393H mutant, potentially due to a small increase in hydrogen bonding to the proximal ligand. Phe393 seems strategically placed to preserve robust σ-electron donation to the heme iron and to fine-tune its electron density by limiting vinyl group rotation.

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CO 与 P450 BM3 F393 突变体结合对血红素辅助因子电子密度分布的影响。
我们对一组细胞色素 P450 BM3 血红素结构域进行了共振拉曼光谱分析,在这些结构域中,高度保守的 Phe393 突变会导致血红素铁还原电位的显著变化。在以前的研究中[Chen, Z., Ost, T.W.B., and Schelvis, J.P.M. (2004) Biochemistry 43, 1798-1808],血红素乙烯基构象与血红素铁还原电位之间的相关性表明,蛋白质对还原血红素辅因子中电子密度的分布具有立体控制作用。本研究旨在监测与 CO 结合后亚铁血红素辅助因子上电子密度的变化。此外,还研究了铁-NO 复合物,以调查近端 Cys400 硫醇酸盐的潜在变化。我们发现,CO 与亚铁血红素结构域结合后,乙烯基会重新定向,在很大程度上形成平面外构象,其程度与 393 位残基的大小相关。我们的结论是,与 CO 配体结合的 FeII dπ 反键在很大程度上消除了乙烯基与卟啉环共轭的需要,以适应与卟啉配体结合的 FeII dπ 反键。铁-CO 和铁-NO 数据表明,在 F393A 突变体和 F393H 突变体中,近端 Cys400 硫醇的 σ 电子捐赠略有减少,这可能是由于近端配体的氢键略有增加。Phe393 似乎具有战略意义,它可以保持对血红素铁的强有力的 σ 电子捐赠,并通过限制乙烯基旋转来微调其电子密度。
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来源期刊
Journal of Inorganic Biochemistry
Journal of Inorganic Biochemistry 生物-生化与分子生物学
CiteScore
7.00
自引率
10.30%
发文量
336
审稿时长
41 days
期刊介绍: The Journal of Inorganic Biochemistry is an established international forum for research in all aspects of Biological Inorganic Chemistry. Original papers of a high scientific level are published in the form of Articles (full length papers), Short Communications, Focused Reviews and Bioinorganic Methods. Topics include: the chemistry, structure and function of metalloenzymes; the interaction of inorganic ions and molecules with proteins and nucleic acids; the synthesis and properties of coordination complexes of biological interest including both structural and functional model systems; the function of metal- containing systems in the regulation of gene expression; the role of metals in medicine; the application of spectroscopic methods to determine the structure of metallobiomolecules; the preparation and characterization of metal-based biomaterials; and related systems. The emphasis of the Journal is on the structure and mechanism of action of metallobiomolecules.
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