Qualitative and Untargeted Volatilome Fingerprinting of Aspergillus sp. and Bulbithecium sp. by HS-SPME-GCMS and Functional Interactions

IF 3.5 4区 生物学 Q2 MICROBIOLOGY Journal of Basic Microbiology Pub Date : 2024-07-16 DOI:10.1002/jobm.202400210
Prathyash Ushus Mancheary John, Siva Kumar Kandula, Satyanarayana Swamy Cheekatla, Venkata Satya Mahesh Kumar Metta, Koteswari Peddi
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Abstract

Research on fungal volatile organic compounds (VOCs) has increased worldwide in the last 10 years, but marine fungal volatilomes remain underexplored. Similarly, the hormone-signaling pathways, agronomic significance, and biocontrol potential of VOCs in plant-associated fungi make the area of research extremely promising. In the current investigation, VOCs of the isolates—Aspergillus sp. GSBT S13 and GSBT S14 from marine sediments, and Bulbithecium sp. GSBT E3 from Eucalyptus foliage were extracted using Head Space solid phase microextraction, followed by gas chromatography-mass spectrometry, identification, statistical analyses, and prediction of functions by KEGG COMPOUND and STITCH 5.0 databases. The significance of this research is fingerprinting VOCs of the isolates from distinct origins, identification of compounds using three libraries (NIST02, NIST14, and W9N11), and using bioinformatic tools to perform functional analysis. The most important findings include the identification of previously unreported compounds in fungi—1-methoxy naphthalene, diethyl phthalate, pentadecane, pristane, and nonanal; the prediction of the involvement of small molecules in the degradation of aromatic compound pathways and activation, inhibition, binding, and catalysis of metabolites with predicted protein partners. This study has ample opportunity to validate the findings and understand the mechanism or mode of action, the interspecies interactions, and the role of the metabolites in geochemical cycles.

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通过 HS-SPME-GCMS 和功能相互作用对曲霉和球酵母进行定性和非靶向挥发性指纹图谱分析。
在过去 10 年中,全世界对真菌挥发性有机化合物(VOCs)的研究不断增加,但对海洋真菌挥发性有机化合物的研究仍然不足。同样,植物相关真菌中挥发性有机化合物的激素信号通路、农艺学意义和生物防治潜力也使该领域的研究极具前景。本研究利用 Head Space 固相微萃取技术提取了海洋沉积物中分离出的曲霉菌 GSBT S13 和 GSBT S14 以及桉树叶片中分离出的球孢霉 GSBT E3 的挥发性有机化合物,然后利用 KEGG COMPOUND 和 STITCH 5.0 数据库进行气相色谱-质谱分析、鉴定、统计分析和功能预测。这项研究的意义在于对来自不同产地的分离物的挥发性有机化合物进行指纹识别,利用三个化合物库(NIST02、NIST14 和 W9N11)对化合物进行鉴定,并利用生物信息学工具进行功能分析。最重要的发现包括:在真菌中鉴定出了以前未报道过的化合物-1-甲氧基萘、邻苯二甲酸二乙酯、十五烷、棱烷和壬醛;预测了小分子参与芳香化合物降解的途径,以及代谢物与预测蛋白质伙伴的活化、抑制、结合和催化。这项研究为验证研究结果、了解代谢物的作用机制或模式、物种间的相互作用以及在地球化学循环中的作用提供了充分的机会。
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来源期刊
Journal of Basic Microbiology
Journal of Basic Microbiology 生物-微生物学
CiteScore
6.10
自引率
0.00%
发文量
134
审稿时长
1.8 months
期刊介绍: The Journal of Basic Microbiology (JBM) publishes primary research papers on both procaryotic and eucaryotic microorganisms, including bacteria, archaea, fungi, algae, protozoans, phages, viruses, viroids and prions. Papers published deal with: microbial interactions (pathogenic, mutualistic, environmental), ecology, physiology, genetics and cell biology/development, new methodologies, i.e., new imaging technologies (e.g. video-fluorescence microscopy, modern TEM applications) novel molecular biology methods (e.g. PCR-based gene targeting or cassettes for cloning of GFP constructs).
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