The crystal and molecular structure of (R)-sirtinol – C26H22N2O2 – a chemo-sensitive enhancer and ligand in metal complexes with important bio-inorganic applications

Ivan Bernal, Roger A. Lalancette, Ahmad Hudaihed, Pavel Kucheryavy
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Abstract

Sirtinol is a known inhibitor of sirtuin proteins – a family of deacetylases involved in the physiology of aging. Its crystalline structure has never been determined except when bound to Fe(III) where it participates in the seven-fold coordination of the metal or to Cu(II) where it acts as a bidentate or tridentate ligand. Herein, we describe the structure of this important molecule, as follows: (a) the prevalent form of the keto-enol tautomerism in the solid state, and (b) in solution. Do they match? If not, how? The crystals of (R)-sirtinol are characterized by a large number of π–π bonded interactions linking molecules in infinite ribbons, which, in turn, are linked by additional π–π interactions of a variety of types, and by hydrogen bonds. In the latter case, we confirm by NMR that the X-ray determined position of an important H atom is on a N atom rather than on an O, which is how the molecule is usually depicted.
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(R)-松脂醇 - C26H22N2O2 的晶体和分子结构 - 一种具有重要生物无机应用价值的化学敏感增强剂和金属配合物配体
Sirtinol 是一种已知的 sirtuin 蛋白抑制剂,sirtuin 蛋白是参与衰老生理过程的脱乙酰酶家族。除了与 Fe(III)结合时参与金属的七重配位,或与 Cu(II)结合时作为双齿或三齿配体外,它的晶体结构尚未确定。在此,我们将对这一重要分子的结构进行如下描述:(a) 酮烯醇同分异构体在固态下的普遍形式,以及 (b) 在溶液中的形式。它们是否吻合?如果不吻合,如何吻合?(R)-松脂醇晶体的特点是有大量的 π-π 键相互作用将分子连接成无限的带状,而这些带状又通过各种类型的附加 π-π 作用和氢键连接起来。在后一种情况下,我们通过核磁共振证实,X 射线确定的一个重要氢原子的位置是在一个 N 原子上,而不是通常描述的分子的 O 原子上。
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