Performance analysis of mathematical methods used to forecast the 2022 New York City Mpox outbreak

IF 6.8 3区 医学 Q1 VIROLOGY Journal of Medical Virology Pub Date : 2024-08-02 DOI:10.1002/jmv.29791
David Kaftan, Hae-Young Kim, Charles Ko, James S. Howard, Prachi Dalal, Nao Yamamoto, R. Scott Braithwaite, Anna Bershteyn
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Abstract

In mid-2022, New York City (NYC) became the epicenter of the US mpox outbreak. We provided real-time mpox case forecasts to the NYC Department of Health and Mental Hygiene to aid in outbreak response. Forecasting methodologies evolved as the epidemic progressed. Initially, lacking knowledge of at-risk population size, we used exponential growth models to forecast cases. Once exponential growth slowed, we used a Susceptible-Exposed-Infectious-Recovered (SEIR) model. Retrospectively, we explored if forecasts could have been improved using an SEIR model in place of our early exponential growth model, with or without knowing the case detection rate. Early forecasts from exponential growth models performed poorly, as 2-week mean absolute error (MAE) grew from 53 cases/week (July 1–14) to 457 cases/week (July 15–28). However, when exponential growth slowed, providing insight into susceptible population size, an SEIR model was able to accurately predict the remainder of the outbreak (7-week MAE: 13.4 cases/week). Retrospectively, we found there was not enough known about the epidemiological characteristics of the outbreak to parameterize an SEIR model early on. However, if the at-risk population and case detection rate were known, an SEIR model could have improved accuracy over exponential growth models early in the outbreak.

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用于预测 2022 年纽约市麻疹疫情的数学方法的性能分析。
2022 年中期,纽约市(NYC)成为美国天花疫情爆发的中心。我们向纽约市卫生和心理卫生局提供了实时天花病例预测,以协助疫情应对工作。随着疫情的发展,预测方法也在不断演变。起初,由于缺乏对高危人群规模的了解,我们使用指数增长模型来预测病例。一旦指数增长放缓,我们就使用易感-暴露-感染-康复(SEIR)模型。回顾过去,我们探讨了在了解或不了解病例检出率的情况下,使用 SEIR 模型代替早期指数增长模型是否能改进预测结果。指数增长模型的早期预测表现不佳,两周平均绝对误差(MAE)从 53 例/周(7 月 1-14 日)增长到 457 例/周(7 月 15-28 日)。然而,当指数增长放缓时,为了解易感人群的规模,SEIR 模型能够准确预测疫情的剩余时间(7 周平均绝对误差:13.4 例/周)。回顾过去,我们发现对疫情的流行病学特征了解不足,无法在早期对 SEIR 模型进行参数化。然而,如果已知高危人群和病例检出率,那么在疫情爆发早期,SEIR 模型的准确性可能会比指数增长模型更高。
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来源期刊
Journal of Medical Virology
Journal of Medical Virology 医学-病毒学
CiteScore
23.20
自引率
2.40%
发文量
777
审稿时长
1 months
期刊介绍: The Journal of Medical Virology focuses on publishing original scientific papers on both basic and applied research related to viruses that affect humans. The journal publishes reports covering a wide range of topics, including the characterization, diagnosis, epidemiology, immunology, and pathogenesis of human virus infections. It also includes studies on virus morphology, genetics, replication, and interactions with host cells. The intended readership of the journal includes virologists, microbiologists, immunologists, infectious disease specialists, diagnostic laboratory technologists, epidemiologists, hematologists, and cell biologists. The Journal of Medical Virology is indexed and abstracted in various databases, including Abstracts in Anthropology (Sage), CABI, AgBiotech News & Information, National Agricultural Library, Biological Abstracts, Embase, Global Health, Web of Science, Veterinary Bulletin, and others.
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