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Performance of Subgenomic RT-PCR for Predicting SARS-CoV-2 Infectivity Compared to Genomic RT-PCR and Culture Isolation
IF 6.8 3区 医学 Q1 VIROLOGY Pub Date : 2025-04-24 DOI: 10.1002/jmv.70363
Célia Sentis, Delphine Parraud, Geneviève Billaud, Martine Valette, Maude Bouscambert-Duchamp, Bruno Lina, Florence Morfin, Alexandre Gaymard

SARS-CoV-2 clinical samples can be detected as positive for a long period of time using real-time RT-PCR, even when patients are no longer infectious. Viral culture is the gold standard for assessing a patient's infectivity, but it is a time-consuming technique and lacks sensitivity. SARS-CoV-2 subgenomic RNA (sgRNA) detection has been used as a proxy for assessing the infectivity but only a limited number of studies have described its use in vitro and in clinical samples. This study aimed to evaluate the correlation between results from viral culture, genomic RT-PCR (gRT-PCR), and subgenomic RT-PCR (sgRT-PCR) during in vitro infection and in clinical samples. In vitro viral replication kinetics showed that both genomic RNA (gRNA) and subgenomic RNA (sgRNA) levels remained stable up to 21 days in the absence of replication-competent virus. Using clinical samples, sgRNA was detected in 87.5% of culture-positive samples, demonstrating better performances than gRT-PCR (Positive predictive value (PPV) 93.3% and Negative predictive value (NPV) of 87.5%) and an almost perfect agreement with culture results (Cohen κ = 0.81 [95% CI: 0.66–0.95]). These findings suggest that testing for sgRNA and/or using a gRNA Ct cut-off of 21.2 could be used as a proxy to determine the presence of SARS-CoV-2 replication-competent virus.

{"title":"Performance of Subgenomic RT-PCR for Predicting SARS-CoV-2 Infectivity Compared to Genomic RT-PCR and Culture Isolation","authors":"Célia Sentis,&nbsp;Delphine Parraud,&nbsp;Geneviève Billaud,&nbsp;Martine Valette,&nbsp;Maude Bouscambert-Duchamp,&nbsp;Bruno Lina,&nbsp;Florence Morfin,&nbsp;Alexandre Gaymard","doi":"10.1002/jmv.70363","DOIUrl":"https://doi.org/10.1002/jmv.70363","url":null,"abstract":"<p>SARS-CoV-2 clinical samples can be detected as positive for a long period of time using real-time RT-PCR, even when patients are no longer infectious. Viral culture is the gold standard for assessing a patient's infectivity, but it is a time-consuming technique and lacks sensitivity. SARS-CoV-2 subgenomic RNA (sgRNA) detection has been used as a proxy for assessing the infectivity but only a limited number of studies have described its use in vitro and in clinical samples. This study aimed to evaluate the correlation between results from viral culture, genomic RT-PCR (gRT-PCR), and subgenomic RT-PCR (sgRT-PCR) during in vitro infection and in clinical samples. In vitro viral replication kinetics showed that both genomic RNA (gRNA) and subgenomic RNA (sgRNA) levels remained stable up to 21 days in the absence of replication-competent virus. Using clinical samples, sgRNA was detected in 87.5% of culture-positive samples, demonstrating better performances than gRT-PCR (Positive predictive value (PPV) 93.3% and Negative predictive value (NPV) of 87.5%) and an almost perfect agreement with culture results (Cohen <i>κ</i> = 0.81 [95% CI: 0.66–0.95]). These findings suggest that testing for sgRNA and/or using a gRNA Ct cut-off of 21.2 could be used as a proxy to determine the presence of SARS-CoV-2 replication-competent virus.</p>","PeriodicalId":16354,"journal":{"name":"Journal of Medical Virology","volume":"97 5","pages":""},"PeriodicalIF":6.8,"publicationDate":"2025-04-24","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://onlinelibrary.wiley.com/doi/epdf/10.1002/jmv.70363","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143865820","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Post-Acute Sequelae of COVID-19 on Alopecia Areata in Individuals With Mental Illness in South Korea and Japan: A Binational Population-Based Cohort Study
IF 6.8 3区 医学 Q1 VIROLOGY Pub Date : 2025-04-24 DOI: 10.1002/jmv.70364
Jaehyeong Cho, Jaeyu Park, Yejun Son, Soeun Kim, Hyesu Jo, Seoyeon Kyung, Hayeon Lee, Dong Keon Yon

While previous studies have primarily focused on post-acute sequelae of COVID-19, the long-term effects of SARS-CoV-2 infection on alopecia areata (AA) among individuals with mental illness remain underexplored. Thus, this study aimed to address this gap by examining the association between post-acute sequelae of COVID-19 and AA, with a specific focus on individuals with mental illness. This study utilized bi-national, large-scale, and population-based cohorts of individuals with pre-existing mental illness: a Korean nationwide cohort (K-COV-N cohort; main cohort; total n = 3 248 448) and a Japanese claims-based cohort (JMDC cohort; replication cohort; total n = 696 332). The outcome focused on the new onset of AA following 30 days after SARS-CoV-2 infection, defined using ICD-10 codes L63. Using a propensity score-based overlap weighted algorithm, the adjusted hazard ratio (aHR) for AA following COVID-19 was calculated for individuals with mental illness. In the main cohort, the risk of AA as post-acute sequelae of COVID-19 was identified among individuals with mental illness (aHR, 1.32 [95% CI, 1.23–1.43]). The risk was significant for mild mental illness (aHR, 1.33 [95% CI, 1.24–1.44]) and within 6 months postinfection (aHR, 1.48 [95% CI, 1.35–1.63]). Similar findings were observed in the replication cohort. In conclusion, among individuals with mental illness, the risk of post-acute sequelae of COVID-19 on AA was elevated—particularly in those with mild mental illness—though this risk decreased over time. Our findings highlight the importance of early screening, integrated care, and equitable healthcare access for managing post-acute sequelae of COVID-19.

{"title":"Post-Acute Sequelae of COVID-19 on Alopecia Areata in Individuals With Mental Illness in South Korea and Japan: A Binational Population-Based Cohort Study","authors":"Jaehyeong Cho,&nbsp;Jaeyu Park,&nbsp;Yejun Son,&nbsp;Soeun Kim,&nbsp;Hyesu Jo,&nbsp;Seoyeon Kyung,&nbsp;Hayeon Lee,&nbsp;Dong Keon Yon","doi":"10.1002/jmv.70364","DOIUrl":"https://doi.org/10.1002/jmv.70364","url":null,"abstract":"<div>\u0000 \u0000 <p>While previous studies have primarily focused on post-acute sequelae of COVID-19, the long-term effects of SARS-CoV-2 infection on alopecia areata (AA) among individuals with mental illness remain underexplored. Thus, this study aimed to address this gap by examining the association between post-acute sequelae of COVID-19 and AA, with a specific focus on individuals with mental illness. This study utilized bi-national, large-scale, and population-based cohorts of individuals with pre-existing mental illness: a Korean nationwide cohort (K-COV-N cohort; main cohort; total <i>n</i> = 3 248 448) and a Japanese claims-based cohort (JMDC cohort; replication cohort; total <i>n</i> = 696 332). The outcome focused on the new onset of AA following 30 days after SARS-CoV-2 infection, defined using ICD-10 codes L63. Using a propensity score-based overlap weighted algorithm, the adjusted hazard ratio (aHR) for AA following COVID-19 was calculated for individuals with mental illness. In the main cohort, the risk of AA as post-acute sequelae of COVID-19 was identified among individuals with mental illness (aHR, 1.32 [95% CI, 1.23–1.43]). The risk was significant for mild mental illness (aHR, 1.33 [95% CI, 1.24–1.44]) and within 6 months postinfection (aHR, 1.48 [95% CI, 1.35–1.63]). Similar findings were observed in the replication cohort. In conclusion, among individuals with mental illness, the risk of post-acute sequelae of COVID-19 on AA was elevated—particularly in those with mild mental illness—though this risk decreased over time. Our findings highlight the importance of early screening, integrated care, and equitable healthcare access for managing post-acute sequelae of COVID-19.</p></div>","PeriodicalId":16354,"journal":{"name":"Journal of Medical Virology","volume":"97 5","pages":""},"PeriodicalIF":6.8,"publicationDate":"2025-04-24","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143871682","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Perinatal Enterovirus Infection in Neonates: A Systematic Review
IF 6.8 3区 医学 Q1 VIROLOGY Pub Date : 2025-04-22 DOI: 10.1002/jmv.70362
Cho Ryok Kang, Jung Hye Byeon, Hannah Cho, Juyoung Lee, Young June Choe

Enteroviruses (EVs) are a common cause of neonatal infections, and perinatal EV infection can lead to severe neonatal disease, including sepsis-like presentations, and adverse pregnancy outcomes. However, a comprehensive understanding of the prevalence and clinical manifestations of perinatal EV infection is lacking. This systematic review investigated the prevalence and clinical manifestations of perinatal EV infection. A comprehensive literature search was performed in PubMed, Embase, and KoreaMed up to August 26, 2024. Studies describing perinatal outcomes related to EV infection in neonates and pregnant women were included. Data extraction and quality assessment were performed independently by two reviewers. Nine studies (three each from America, Europe, and Asia) were included. Severe neonatal complications included sepsis-like disease and death. Maternal symptoms included fever, uterine contractions, and rash. Perinatal EV infection prevalence ranged from 60% to 77.8% in severely affected neonates, 25% to 57.1% in infected pregnant women, and 4.6% to 46.1% in all infected newborns. Placental infection was confirmed in 38.3% of severe neonatal cases. This review highlights the global presence and potential severity of perinatal EV infections, underscoring the need for enhanced surveillance, standardized diagnostic protocols, and further research to inform effective prevention and management strategies.

{"title":"Perinatal Enterovirus Infection in Neonates: A Systematic Review","authors":"Cho Ryok Kang,&nbsp;Jung Hye Byeon,&nbsp;Hannah Cho,&nbsp;Juyoung Lee,&nbsp;Young June Choe","doi":"10.1002/jmv.70362","DOIUrl":"https://doi.org/10.1002/jmv.70362","url":null,"abstract":"<p>Enteroviruses (EVs) are a common cause of neonatal infections, and perinatal EV infection can lead to severe neonatal disease, including sepsis-like presentations, and adverse pregnancy outcomes. However, a comprehensive understanding of the prevalence and clinical manifestations of perinatal EV infection is lacking. This systematic review investigated the prevalence and clinical manifestations of perinatal EV infection. A comprehensive literature search was performed in PubMed, Embase, and KoreaMed up to August 26, 2024. Studies describing perinatal outcomes related to EV infection in neonates and pregnant women were included. Data extraction and quality assessment were performed independently by two reviewers. Nine studies (three each from America, Europe, and Asia) were included. Severe neonatal complications included sepsis-like disease and death. Maternal symptoms included fever, uterine contractions, and rash. Perinatal EV infection prevalence ranged from 60% to 77.8% in severely affected neonates, 25% to 57.1% in infected pregnant women, and 4.6% to 46.1% in all infected newborns. Placental infection was confirmed in 38.3% of severe neonatal cases. This review highlights the global presence and potential severity of perinatal EV infections, underscoring the need for enhanced surveillance, standardized diagnostic protocols, and further research to inform effective prevention and management strategies.</p>","PeriodicalId":16354,"journal":{"name":"Journal of Medical Virology","volume":"97 5","pages":""},"PeriodicalIF":6.8,"publicationDate":"2025-04-22","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://onlinelibrary.wiley.com/doi/epdf/10.1002/jmv.70362","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143861759","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
From Good to Better: Comparative Epitope Profiling Facilitates Rational Design of Effective Multi-Epitope Vaccines Against Viruses
IF 6.8 3区 医学 Q1 VIROLOGY Pub Date : 2025-04-22 DOI: 10.1002/jmv.70366
Xinfeng Li, Yiyao Wang, Mingyue Zhong, Lu Liu, Heng Xue, Xia Chuai, Hongping Wei, Sandra Chiu, Hang Yang
{"title":"From Good to Better: Comparative Epitope Profiling Facilitates Rational Design of Effective Multi-Epitope Vaccines Against Viruses","authors":"Xinfeng Li,&nbsp;Yiyao Wang,&nbsp;Mingyue Zhong,&nbsp;Lu Liu,&nbsp;Heng Xue,&nbsp;Xia Chuai,&nbsp;Hongping Wei,&nbsp;Sandra Chiu,&nbsp;Hang Yang","doi":"10.1002/jmv.70366","DOIUrl":"https://doi.org/10.1002/jmv.70366","url":null,"abstract":"","PeriodicalId":16354,"journal":{"name":"Journal of Medical Virology","volume":"97 5","pages":""},"PeriodicalIF":6.8,"publicationDate":"2025-04-22","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143856781","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Hepatitis B Virus Promotes Angiogenesis in Hepatocellular Carcinoma by Increasing m6A Modification of VEGFA mRNA via IGF2BP3
IF 6.8 3区 医学 Q1 VIROLOGY Pub Date : 2025-04-22 DOI: 10.1002/jmv.70356
Xiaoxin Xu, Yi Zhang, Shuxiang Wu, Yuecheng Wu, Xinjian Lin, Kunqi Chen, Xu Lin

Angiogenesis plays a crucial role in the development of HBV-related hepatocellular carcinoma (HCC). VEGFA is a key angiogenic factor, and while its transcriptional regulation by HBV has been extensively studied, its posttranscriptional regulation by HBV remains poorly understood. Building on our previous findings that delineated an RBM15/YTHDF2/IGF2BP3 regulatory axis in m6A-mediated RNA metabolism in HCC, this study further explores the posttranscriptional regulation of VEGFA by HBV. By MeRIP-qPCR and integrating MeRIP-seq data, we discovered that HBV enhances m6A methylation of VEGFA mRNA. Comprehensive cellular and molecular biology experiments demonstrated that HBV induces the upregulation of IGF2BP3, which serves as a key “reader” that recognizes and stabilizes VEGFA mRNA in an m6A methylation-dependent manner. This stabilization leads to elevated VEGFA expression, promoting enhanced cellular functions such as HUVEC migration and tube formation. Furthermore, in an HBV-associated HCC xenograft model, IGF2BP3 knockdown resulted in decreased VEGFA expression and inhibited tumor growth. This study expands our understanding of HBV-driven angiogenesis and identifies the IGF2BP3-VEGFA axis as a potential therapeutic target for antiangiogenic strategies in HBV-related HCC.

{"title":"Hepatitis B Virus Promotes Angiogenesis in Hepatocellular Carcinoma by Increasing m6A Modification of VEGFA mRNA via IGF2BP3","authors":"Xiaoxin Xu,&nbsp;Yi Zhang,&nbsp;Shuxiang Wu,&nbsp;Yuecheng Wu,&nbsp;Xinjian Lin,&nbsp;Kunqi Chen,&nbsp;Xu Lin","doi":"10.1002/jmv.70356","DOIUrl":"https://doi.org/10.1002/jmv.70356","url":null,"abstract":"<div>\u0000 \u0000 <p>Angiogenesis plays a crucial role in the development of HBV-related hepatocellular carcinoma (HCC). VEGFA is a key angiogenic factor, and while its transcriptional regulation by HBV has been extensively studied, its posttranscriptional regulation by HBV remains poorly understood. Building on our previous findings that delineated an RBM15/YTHDF2/IGF2BP3 regulatory axis in m6A-mediated RNA metabolism in HCC, this study further explores the posttranscriptional regulation of VEGFA by HBV. By MeRIP-qPCR and integrating MeRIP-seq data, we discovered that HBV enhances m6A methylation of VEGFA mRNA. Comprehensive cellular and molecular biology experiments demonstrated that HBV induces the upregulation of IGF2BP3, which serves as a key “reader” that recognizes and stabilizes VEGFA mRNA in an m6A methylation-dependent manner. This stabilization leads to elevated VEGFA expression, promoting enhanced cellular functions such as HUVEC migration and tube formation. Furthermore, in an HBV-associated HCC xenograft model, IGF2BP3 knockdown resulted in decreased VEGFA expression and inhibited tumor growth. This study expands our understanding of HBV-driven angiogenesis and identifies the IGF2BP3-VEGFA axis as a potential therapeutic target for antiangiogenic strategies in HBV-related HCC.</p>\u0000 </div>","PeriodicalId":16354,"journal":{"name":"Journal of Medical Virology","volume":"97 5","pages":""},"PeriodicalIF":6.8,"publicationDate":"2025-04-22","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143856740","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Prolonged Zika Virus NS1 Protein Circulation in Patient Sera Impacts Clinical Outcome Before the Rise of a Specific IgM Response
IF 6.8 3区 医学 Q1 VIROLOGY Pub Date : 2025-04-22 DOI: 10.1002/jmv.70368
Carole Tamietti, Tharshana Stephen, Alexander Rouvinski, Bernard Tenebray, Isabelle Leparc-Goffard, Franck de Laval, Sandrine Fernandes-Pellerin, Jean-Claude Manuguerra, Félix Rey, Milena Hasan, Cyril Badaut, Marie Flamand, Séverine Matheus, Sébastien Briolant

Zika virus (ZIKV) is a neurotropic virus that can be transmitted congenitally. In ZIKV-infected pregnant women, placental dysfunction is associated with the secretion of nonstructural protein 1 (NS1). In this study, the kinetics of NS1 secretion and antibody response were assessed and characterized in the serum of ZIKV-positive adult patients recruited in French Guiana. NS1 concentrations were quantified by a single molecule array (SiMoA) in 164 sequential serum samples collected from thirty patients during the first month after onset of symptoms. Serum NS1 concentrations in this cohort were unexpectedly low and ranged from 0.1 pg/mL to 380 pg/mL. The median persistence of NS1 in patients with a clinical score of 2 (6 days) was significantly lower than in patients with a clinical score of 3 (8 days). In both groups of patients, anti-NS1 IgM and IgG kinetics were similar but patients with a milder clinical score of 2 had statistically higher levels of specific IgM than those with a clinical score of 3. Herein, it was shown that NS1 circulating in patient sera is associated with clinical outcome, emphasizing the role of NS1 in ZIKV pathogenesis.

{"title":"Prolonged Zika Virus NS1 Protein Circulation in Patient Sera Impacts Clinical Outcome Before the Rise of a Specific IgM Response","authors":"Carole Tamietti,&nbsp;Tharshana Stephen,&nbsp;Alexander Rouvinski,&nbsp;Bernard Tenebray,&nbsp;Isabelle Leparc-Goffard,&nbsp;Franck de Laval,&nbsp;Sandrine Fernandes-Pellerin,&nbsp;Jean-Claude Manuguerra,&nbsp;Félix Rey,&nbsp;Milena Hasan,&nbsp;Cyril Badaut,&nbsp;Marie Flamand,&nbsp;Séverine Matheus,&nbsp;Sébastien Briolant","doi":"10.1002/jmv.70368","DOIUrl":"https://doi.org/10.1002/jmv.70368","url":null,"abstract":"<p>Zika virus (ZIKV) is a neurotropic virus that can be transmitted congenitally. In ZIKV-infected pregnant women, placental dysfunction is associated with the secretion of nonstructural protein 1 (NS1). In this study, the kinetics of NS1 secretion and antibody response were assessed and characterized in the serum of ZIKV-positive adult patients recruited in French Guiana. NS1 concentrations were quantified by a single molecule array (SiMoA) in 164 sequential serum samples collected from thirty patients during the first month after onset of symptoms. Serum NS1 concentrations in this cohort were unexpectedly low and ranged from 0.1 pg/mL to 380 pg/mL. The median persistence of NS1 in patients with a clinical score of 2 (6 days) was significantly lower than in patients with a clinical score of 3 (8 days). In both groups of patients, anti-NS1 IgM and IgG kinetics were similar but patients with a milder clinical score of 2 had statistically higher levels of specific IgM than those with a clinical score of 3. Herein, it was shown that NS1 circulating in patient sera is associated with clinical outcome, emphasizing the role of NS1 in ZIKV pathogenesis.</p>","PeriodicalId":16354,"journal":{"name":"Journal of Medical Virology","volume":"97 5","pages":""},"PeriodicalIF":6.8,"publicationDate":"2025-04-22","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://onlinelibrary.wiley.com/doi/epdf/10.1002/jmv.70368","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143861758","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
A Single-Cell Atlas Revealed Altered B Cells and Neutrophils Immune Signatures and Inflammatory Responses in SFTSV Infection
IF 6.8 3区 医学 Q1 VIROLOGY Pub Date : 2025-04-22 DOI: 10.1002/jmv.70354
Qiujing Wang, Ziniu Dai, Xiaodan Hu, Zhengmei Lu, Di Zheng, Lingyun Wang, Liyun Xu, Xiaoci Hong, Jinhao Bi, Xinyi Li, Dapeng Li, Shibo Li

Severe fever with thrombocytopenia syndrome virus (SFTSV) presents an emerging public threat due to its high mortality rate and ever-expanding geographic distribution. However, characterization of SFTSV infection pathogenesis and immunological impact at single-cell level remains underexplored. Here, we employ single-cell transcriptome-wide sequencing in peripheral blood mononuclear cells (PBMCs) from hospitalized SFTSV-infected patients to map the immune landscape across acute and convalescent stages of infection. The results reveal significant alterations in immune cell compositions, along with profound disruption in intercellular crosstalk. B cells and neutrophils appear to be the primary target for SFTSV infection besides monocytes, as evidenced by heightened virus-related pathways in these two cell types during the acute phase. In addition, SFTSV infection induces a substantial inflammatory response, which were prominently reflected in monocytes and neutrophils. These data illustrate the complex immune remodeling and inflammatory cascades triggered by SFTSV, with a particular focus on its effects on B cells and neutrophils, bringing novel insights into future therapeutic developments.

{"title":"A Single-Cell Atlas Revealed Altered B Cells and Neutrophils Immune Signatures and Inflammatory Responses in SFTSV Infection","authors":"Qiujing Wang,&nbsp;Ziniu Dai,&nbsp;Xiaodan Hu,&nbsp;Zhengmei Lu,&nbsp;Di Zheng,&nbsp;Lingyun Wang,&nbsp;Liyun Xu,&nbsp;Xiaoci Hong,&nbsp;Jinhao Bi,&nbsp;Xinyi Li,&nbsp;Dapeng Li,&nbsp;Shibo Li","doi":"10.1002/jmv.70354","DOIUrl":"https://doi.org/10.1002/jmv.70354","url":null,"abstract":"<div>\u0000 \u0000 <p>Severe fever with thrombocytopenia syndrome virus (SFTSV) presents an emerging public threat due to its high mortality rate and ever-expanding geographic distribution. However, characterization of SFTSV infection pathogenesis and immunological impact at single-cell level remains underexplored. Here, we employ single-cell transcriptome-wide sequencing in peripheral blood mononuclear cells (PBMCs) from hospitalized SFTSV-infected patients to map the immune landscape across acute and convalescent stages of infection. The results reveal significant alterations in immune cell compositions, along with profound disruption in intercellular crosstalk. B cells and neutrophils appear to be the primary target for SFTSV infection besides monocytes, as evidenced by heightened virus-related pathways in these two cell types during the acute phase. In addition, SFTSV infection induces a substantial inflammatory response, which were prominently reflected in monocytes and neutrophils. These data illustrate the complex immune remodeling and inflammatory cascades triggered by SFTSV, with a particular focus on its effects on B cells and neutrophils, bringing novel insights into future therapeutic developments.</p></div>","PeriodicalId":16354,"journal":{"name":"Journal of Medical Virology","volume":"97 5","pages":""},"PeriodicalIF":6.8,"publicationDate":"2025-04-22","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143861760","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Single-Cell Atlas of the Peripheral Immune Response in Patients With Chronic Hepatitis B
IF 6.8 3区 医学 Q1 VIROLOGY Pub Date : 2025-04-21 DOI: 10.1002/jmv.70360
Li Huang, Bo Ye, Feinan Cao, Bing Ruan, Xuefen Li

Cellular immune responses are crucial in determining outcomes of the hepatitis B virus (HBV) infection. Ineffective immune responses enable persistent HBV infection and contribute to progressive liver disease. Understanding the mechanisms underlying immunological HBV tolerance and restoring functional adaptive immune responses is essential for successful chronic hepatitis B (CHB) treatment. This study examined the dysregulated immune responses and immunopathological cell states associated with CHB using single-cell RNA sequencing of peripheral blood mononuclear cells to investigate immune cell composition and transcriptional differences between patients with CHB and healthy donors. Phenotypic alterations in the lymphoid and myeloid compartments were observed following HBV infection. T cell immune profiling in patients with CHB showed enrichment of exhausted CD8+ T cells, impaired cytotoxicity of effector CD8+ T cells, and increased regulatory T cell (Treg) suppressive activity. Immature neutrophils and a unique CD14+ monocyte subset (myeloid-derived suppressor cells) exhibited potent immunosuppressive abilities. A novel population of CD14+CD163+VSIG4+ M2-like macrophages with immunosuppressive and anti-inflammatory phenotypes was enriched in a patient with severe CHB and liver failure, indicating a potential contribution to dysfunctional immune responses. Our study demonstrated immune exhaustion and evasion in chronic HBV infection, elucidating its immunopathological features and suggesting new therapeutic strategies for immune-mediated disorders and unresolved chronic HBV infection.

{"title":"Single-Cell Atlas of the Peripheral Immune Response in Patients With Chronic Hepatitis B","authors":"Li Huang,&nbsp;Bo Ye,&nbsp;Feinan Cao,&nbsp;Bing Ruan,&nbsp;Xuefen Li","doi":"10.1002/jmv.70360","DOIUrl":"https://doi.org/10.1002/jmv.70360","url":null,"abstract":"<div>\u0000 \u0000 <p>Cellular immune responses are crucial in determining outcomes of the hepatitis B virus (HBV) infection. Ineffective immune responses enable persistent HBV infection and contribute to progressive liver disease. Understanding the mechanisms underlying immunological HBV tolerance and restoring functional adaptive immune responses is essential for successful chronic hepatitis B (CHB) treatment. This study examined the dysregulated immune responses and immunopathological cell states associated with CHB using single-cell RNA sequencing of peripheral blood mononuclear cells to investigate immune cell composition and transcriptional differences between patients with CHB and healthy donors. Phenotypic alterations in the lymphoid and myeloid compartments were observed following HBV infection. T cell immune profiling in patients with CHB showed enrichment of exhausted CD8+ T cells, impaired cytotoxicity of effector CD8+ T cells, and increased regulatory T cell (Treg) suppressive activity. Immature neutrophils and a unique CD14+ monocyte subset (myeloid-derived suppressor cells) exhibited potent immunosuppressive abilities. A novel population of CD14+CD163+VSIG4+ M2-like macrophages with immunosuppressive and anti-inflammatory phenotypes was enriched in a patient with severe CHB and liver failure, indicating a potential contribution to dysfunctional immune responses. Our study demonstrated immune exhaustion and evasion in chronic HBV infection, elucidating its immunopathological features and suggesting new therapeutic strategies for immune-mediated disorders and unresolved chronic HBV infection.</p>\u0000 </div>","PeriodicalId":16354,"journal":{"name":"Journal of Medical Virology","volume":"97 5","pages":""},"PeriodicalIF":6.8,"publicationDate":"2025-04-21","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143852799","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
A Visual Nomogram Survival Prediction Model in Acquired Immune Deficiency Syndrome (AIDS)-Related Diffuse Large B-Cell Lymphoma 获得性免疫缺陷综合征(AIDS)相关弥漫大 B 细胞淋巴瘤的可视化提名图生存预测模型
IF 6.8 3区 医学 Q1 VIROLOGY Pub Date : 2025-04-21 DOI: 10.1002/jmv.70359
Tao Yang, Haike Lei, Jun Li, Yang Liang, Chaoyu Wang, Jun Liu, Yan Wu, Jun Liu, Qiwen Zhou, Haiyan Min, Zailin Yang, Xiaomei Zhang, Yunhong Huang, Guo Wei, Wei Zhang, Min Wang, Xiaoqiong Tang, Zhanshu Liu, Yaokai Chen, Hui Zhou, Robert Peter Gale, Yongzhong Wu, Yao Liu

Estimating the prognosis of people with newly diagnosed AIDS-related diffuse large B-cell lymphoma (AR-DLBCL) is challenging. We did a prospective, multicenter cohort study using data from 306 consecutive subjects, including training cohort (N = 215) and external validation cohorts (N = 91), to develop and validate a visual nomogram, termed the ARDPI model. Seven co-variates were independently correlated with survival, including age, LMR, CD5, blood EBV-DNA copy number, CD4/CD8, CNS involvement, and anti-HIV therapy (ART), were used to develop the ARDPI model. AUROCs of the model for 1-, 3-, and 5-year survivals were 0.80 (95% CI: 0.72, 0.88), 0.78 (0.69, 0.87), and 0.77 (0.63, 0.91) in the training cohort and 0.85 (0.75, 0.95), 0.80 (0.66, 0.94), and 0.79 (0.61, 0.99) in the external validation cohort. The prediction accuracy of the ARDPI model was better compared with the IPI and NCCN-IPI models. Using the ARDPI model, we identified three risk cohorts with 3-year survivals of 88% (79, 98%), 35% (23, 54%), and 23% (12, 45%) in the training cohort (p < 0.001) and 93% (80, 100%), 46% (27, 78%), and 17% (5, 47%) in the external validation cohort (p < 0.001). The ARDPI accurately predicts the survival of newly diagnosed persons with AR-DLBCL and has clinical benefits. Accuracy is better compared with the IPI and NCCN-IPI prediction models. We also developed a web server to facilitate using our model.

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引用次数: 0
Post-Acute Sequelae of COVID-19 on Irritable Bowel Syndrome in Individuals With Mental Illness in South Korea: A Population-Based Cohort Study
IF 6.8 3区 医学 Q1 VIROLOGY Pub Date : 2025-04-19 DOI: 10.1002/jmv.70345
Tae Hyeon Kim, Yejun Son, Jaeyu Park, Soeun Kim, Hyesu Jo, Hayeon Lee, Dong Keon Yon
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引用次数: 0
期刊
Journal of Medical Virology
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