Metatranscriptomic responses of High-Arctic tundra soil microbiomes to carbon input

Abstract

Over recent decades, there has been a noticeable change in vegetation diversity accompanied by increased plant productivity in tundra systems of the High-Arctic, leading to elevated carbon and nutrient inputs into the soil. This shift can alter microbial community composition and activity in these ecosystems. In this study, we aimed to identify genes transcribed by active microorganisms and compare their expression in unamended and amended soils with labile carbon and/or nitrogen compounds. We also assessed gene expression differences in tundra soils with varying edaphic characteristics (upslope vs. downslope sites). We amended soils with either glycine or cellulose or left them unamended (i.e., control) for 7 days of incubation, and we isolated and sequenced RNA using Illumina technology. Whereas we observed only a weak transcriptional response after cellulose addition, the glycine addition significantly influenced transcriptional patterns, with upregulation of carbon- and nitrogen-cycling genes. Notably, microbial taxa from the Pseudomonadaceae and Micrococcaceae families showed the most pronounced response to glycine, indicating a shift of the communities towards copiotrophic organisms. This response was consistent across the two soil types, suggesting a common impact on microbial community activity. These findings suggest that an increase in carbon and nitrogen inputs could substantially affect microbial functioning in High-Arctic tundra soils, with potential implications for ecosystem dynamics under global warming.