Attention improvement for data-driven analyzing fluorescence excitation-emission matrix spectra via interpretable attention mechanism

IF 10.4 1区 工程技术 Q1 ENGINEERING, CHEMICAL npj Clean Water Pub Date : 2024-08-08 DOI:10.1038/s41545-024-00367-w
Run-Ze Xu, Jia-Shun Cao, Jing-Yang Luo, Bing-Jie Ni, Fang Fang, Weijing Liu, Peifang Wang
{"title":"Attention improvement for data-driven analyzing fluorescence excitation-emission matrix spectra via interpretable attention mechanism","authors":"Run-Ze Xu, Jia-Shun Cao, Jing-Yang Luo, Bing-Jie Ni, Fang Fang, Weijing Liu, Peifang Wang","doi":"10.1038/s41545-024-00367-w","DOIUrl":null,"url":null,"abstract":"Analyzing three-dimensional excitation-emission matrix (3D-EEM) spectra through machine learning models has drawn increasing attention, whereas the reliability of these machine learning models remains unclear due to their “black box” nature. In this study, the convolutional neural network (CNN) for classifying numbers of fluorescent components in 3D-EEM spectra was interpreted by gradient-weighted class activation mapping (Grad-CAM), guided Grad-CAM, and structured attention graphs (SAGs). Results showed that the original CNN classifier with high classification accuracy may make a classification based on misleading attention to the non-fluorescence area in 3D-EEM spectra. By removing Rayleigh scatterings in 3D-EEM spectra and integrating convolutional block attention module (CBAM) in CNN classifiers, the correct attention of the trained CNN classifier with CBAM greatly increased from 17.6% to 57.2%. This work formulated strategies for improving CNN classifiers associated with environmental fields and would provide great help for water determination in both natural and artificial environments.","PeriodicalId":19375,"journal":{"name":"npj Clean Water","volume":" ","pages":"1-9"},"PeriodicalIF":10.4000,"publicationDate":"2024-08-08","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.nature.com/articles/s41545-024-00367-w.pdf","citationCount":"0","resultStr":null,"platform":"Semanticscholar","paperid":null,"PeriodicalName":"npj Clean Water","FirstCategoryId":"5","ListUrlMain":"https://www.nature.com/articles/s41545-024-00367-w","RegionNum":1,"RegionCategory":"工程技术","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q1","JCRName":"ENGINEERING, CHEMICAL","Score":null,"Total":0}
引用次数: 0

Abstract

Analyzing three-dimensional excitation-emission matrix (3D-EEM) spectra through machine learning models has drawn increasing attention, whereas the reliability of these machine learning models remains unclear due to their “black box” nature. In this study, the convolutional neural network (CNN) for classifying numbers of fluorescent components in 3D-EEM spectra was interpreted by gradient-weighted class activation mapping (Grad-CAM), guided Grad-CAM, and structured attention graphs (SAGs). Results showed that the original CNN classifier with high classification accuracy may make a classification based on misleading attention to the non-fluorescence area in 3D-EEM spectra. By removing Rayleigh scatterings in 3D-EEM spectra and integrating convolutional block attention module (CBAM) in CNN classifiers, the correct attention of the trained CNN classifier with CBAM greatly increased from 17.6% to 57.2%. This work formulated strategies for improving CNN classifiers associated with environmental fields and would provide great help for water determination in both natural and artificial environments.

Abstract Image

Abstract Image

查看原文
分享 分享
微信好友 朋友圈 QQ好友 复制链接
本刊更多论文
通过可解释的注意力机制提高数据驱动分析荧光激发-发射矩阵光谱的注意力
通过机器学习模型分析三维激发-发射矩阵(3D-EEM)光谱已引起越来越多的关注,但由于其 "黑箱 "性质,这些机器学习模型的可靠性仍不明确。本研究通过梯度加权类激活图谱(Grad-CAM)、引导 Grad-CAM 和结构化注意力图谱(SAGs)对卷积神经网络(CNN)进行了解释,以对 3D-EEM 光谱中的荧光成分数量进行分类。结果表明,原始 CNN 分类器的分类准确率很高,但可能会误导对 3D-EEM 光谱中非荧光区域的关注而进行分类。通过去除三维电子显微镜光谱中的瑞利散射,并在 CNN 分类器中集成卷积块注意模块(CBAM),使用 CBAM 训练的 CNN 分类器的正确注意率从 17.6% 大幅提高到 57.2%。这项工作为改进与环境领域相关的 CNN 分类器制定了策略,将为自然和人工环境中的水判定提供巨大帮助。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
求助全文
约1分钟内获得全文 去求助
来源期刊
npj Clean Water
npj Clean Water Environmental Science-Water Science and Technology
CiteScore
15.30
自引率
2.60%
发文量
61
审稿时长
5 weeks
期刊介绍: npj Clean Water publishes high-quality papers that report cutting-edge science, technology, applications, policies, and societal issues contributing to a more sustainable supply of clean water. The journal's publications may also support and accelerate the achievement of Sustainable Development Goal 6, which focuses on clean water and sanitation.
期刊最新文献
Biomass-derived multiatom-doped carbon dots for the photocatalytic reduction of Cr(VI) and precipitation of Cr(III) A review of advances & potential of applying nanomaterials for biofilm inhibition Balancing sustainability goals and treatment efficacy for PFAS removal from water Metal–phenolic coating on membrane for ultrafast antibiotics adsorptive removal from water Nanomaterial enhanced photoelectrocatalysis and photocatalysis for chemical oxygen demand sensing a comprehensive review
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
现在去查看 取消
×
提示
确定
0
微信
客服QQ
Book学术公众号 扫码关注我们
反馈
×
意见反馈
请填写您的意见或建议
请填写您的手机或邮箱
已复制链接
已复制链接
快去分享给好友吧!
我知道了
×
扫码分享
扫码分享
Book学术官方微信
Book学术文献互助
Book学术文献互助群
群 号:481959085
Book学术
文献互助 智能选刊 最新文献 互助须知 联系我们:info@booksci.cn
Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。
Copyright © 2023 Book学术 All rights reserved.
ghs 京公网安备 11010802042870号 京ICP备2023020795号-1