Kinetic and structural analysis of redox-reversible artificial imine reductases

IF 3.8 2区 化学 Q2 BIOCHEMISTRY & MOLECULAR BIOLOGY Journal of Inorganic Biochemistry Pub Date : 2024-08-06 DOI:10.1016/j.jinorgbio.2024.112691
Alex H. Miller , Ingrid B.S. Martins , Elena V. Blagova , Keith S. Wilson , Anne-K. Duhme-Klair
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Abstract

Three artificial imine reductases, constructed via supramolecular anchoring utilising FeIII-azotochelin, a natural siderophore, to bind an iridium-containing catalyst to periplasmic siderophore-binding protein (PBP) scaffolds, have previously been synthesised and subjected to catalytic testing. Despite exhibiting high homology and possessing conserved siderophore anchor coordinating residues, the three artificial metalloenzymes (ArMs) displayed significant variability in turnover frequencies (TOFs). To further understand the catalytic properties of these ArMs, their kinetic behaviour was evaluated with respect to the reduction of three cyclic imines: dihydroisoquinoline, harmaline, and papaverine. Kinetic analyses revealed that all examined ArMs adhere to Michaelis-Menten kinetics, with the most pronounced saturation profile observed for the substrate harmaline. Additionally, molecular docking studies suggested varied hydrogen-bonding interactions between substrates and residues within the artificial binding pocket. Pi-stacking and pi-cation interactions were identified for harmaline and papaverine, corroborating the higher affinity of these substrates for the ArMs in comparison to dihydroisoquinoline. Furthermore, it was demonstrated that multiple cavities are capable of accommodating substrates in close proximity to the catalytic centre, thereby rationalising the moderate enantioselectivity conferred by the unmodified scaffolds.

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氧化还原型人工亚胺还原酶的动力学和结构分析。
以前曾合成了三种人工亚胺还原酶,它们是通过超分子锚定技术,利用天然苷元FeⅢ-偶氮染料将含铱催化剂结合到外质苷元结合蛋白(PBP)支架上而构建的,并进行了催化测试。尽管这三种人工金属酶(ArMs)表现出高度的同源性,并拥有保守的苷元锚配位残基,但它们的周转频率(TOFs)却有很大的差异。为了进一步了解这些 ArMs 的催化特性,我们评估了它们还原三种环状亚胺(二氢异喹啉、禾草灵和罂粟碱)的动力学行为。动力学分析表明,所有研究的 ArMs 都遵循 Michaelis-Menten 动力学,底物禾草灵的饱和曲线最为明显。此外,分子对接研究表明,底物与人工结合口袋内的残基之间存在不同的氢键相互作用。研究发现,与二氢异喹啉相比,缬草碱和罂粟碱具有更高的亲和力,这也证实了这些底物与 ArMs 之间的 Pi-stacking 和 pi-cation 相互作用。此外,研究还证明多个空腔能够容纳底物,使其靠近催化中心,从而使未经修饰的支架具有适度的对映选择性变得合理。
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来源期刊
Journal of Inorganic Biochemistry
Journal of Inorganic Biochemistry 生物-生化与分子生物学
CiteScore
7.00
自引率
10.30%
发文量
336
审稿时长
41 days
期刊介绍: The Journal of Inorganic Biochemistry is an established international forum for research in all aspects of Biological Inorganic Chemistry. Original papers of a high scientific level are published in the form of Articles (full length papers), Short Communications, Focused Reviews and Bioinorganic Methods. Topics include: the chemistry, structure and function of metalloenzymes; the interaction of inorganic ions and molecules with proteins and nucleic acids; the synthesis and properties of coordination complexes of biological interest including both structural and functional model systems; the function of metal- containing systems in the regulation of gene expression; the role of metals in medicine; the application of spectroscopic methods to determine the structure of metallobiomolecules; the preparation and characterization of metal-based biomaterials; and related systems. The emphasis of the Journal is on the structure and mechanism of action of metallobiomolecules.
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