A modular open-source software platform for BCI research with application in closed-loop deep brain stimulation

Matthias Dold, Joana Pereira, Bastian Sajonz, Volker A. Coenen, Marcus L. F. Janssen, Michael Tangermann
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Abstract

This work introduces Dareplane, a modular and broad technology agnostic open source software platform for brain-computer interface research with an application focus on adaptive deep brain stimulation (aDBS). While the search for suitable biomarkers to inform aDBS has provided rich results over the last two decades, development of control strategies is not progressing at the same pace. One difficulty for investigating control approaches resides with the complex setups required for aDBS experiments. The Dareplane platform supports aDBS setups, and more generally brain computer interfaces, by providing a modular, technology-agnostic, and easy-to-implement software platform to make experimental setups more resilient and replicable. The key features of the platform are presented and the composition of modules into a full experimental setup is discussed in the context of a Python-based orchestration module. The performance of a typical experimental setup on Dareplane for aDBS is evaluated in three benchtop experiments, covering (a) an easy-to-replicate setup using an Arduino microcontroller, (b) a setup with hardware of an implantable pulse generator, and (c) a setup using an established and CE certified external neurostimulator. Benchmark results are presented for individual processing steps and full closed-loop processing. The results show that the microcontroller setup in (a) provides timing comparable to the realistic setups in (b) and (c). The Dareplane platform was successfully used in a total of 19 open-loop DBS sessions with externalized DBS and electrocorticography (ECoG) leads. In addition, the full technical feasibility of the platform in the aDBS context is demonstrated in a first closed-loop session with externalized leads on a patient with Parkinson's disease receiving DBS treatment.
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用于闭环深部脑刺激的模块化开源 BCI 研究软件平台
这项工作介绍了 Dareplane,这是一个模块化、技术广泛的开源软件平台,用于脑机接口研究,重点应用于自适应深部脑刺激(aDBS)。在过去二十年里,寻找合适的生物标志物为 aDBS 提供信息的工作取得了丰硕成果,但控制策略的开发却没有取得同步进展。研究控制方法的一个困难在于 aDBS 实验所需的复杂设置。Dareplane 平台通过提供模块化、与技术无关、易于实施的软件平台,使实验装置更具弹性和可复制性,从而为 DBS 装置以及更广泛的脑计算机接口提供支持。本文介绍了该平台的主要特点,并结合基于 Python 的协调模块讨论了如何将模块组成一个完整的实验装置。在三个台式实验中评估了 Dareplane 上用于 DBS 的典型实验装置的性能,包括:(a)使用 Arduino 微控制器的易于复制的装置;(b)使用植入式脉冲发生器硬件的装置;以及(c)使用经 CE 认证的成熟外部神经刺激器的装置。演示了单个处理步骤和全闭环处理的基准结果。结果表明,(a)中的微控制器设置所提供的时序与(b)和(c)中的实际设置相当。Dareplane 平台共成功用于 19 次外置 DBS 和心电图导线的开环 DBS 治疗。此外,在一名接受 DBS 治疗的帕金森病患者的首次外置导联闭环治疗中,也证明了该平台在 DBS 情况下的完全技术可行性。
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