Binod Kumar, Nilima N Brahmbhatt, Bhupendrakumar Thakre, Biswa Ranjan Maharana, Vijay L Parmar, Manoj Kumar
{"title":"Molecular identification of haemoparasites in animals using blood lysate PCR: a quick and inexpensive alternative to purified whole genomic DNA.","authors":"Binod Kumar, Nilima N Brahmbhatt, Bhupendrakumar Thakre, Biswa Ranjan Maharana, Vijay L Parmar, Manoj Kumar","doi":"10.1080/10495398.2024.2390935","DOIUrl":null,"url":null,"abstract":"<p><p>Haemoparasitic diseases constitute a significant constraint to economic livestock farming. Diagnostic techniques that are inexpensive, rapid, reliable, and precise are crucial for the management of diseases. In this context, PCR assays are very valuable yet expensive since the samples must be processed before being included in the PCR reaction. Accordingly, the goal of the current study was to lower the PCR costs without jeopardizing the assay's sensitivity and specificity. For that purpose, the alkaline solution was optimized for low cost and quick DNA extraction (blood lysate), and PCR reagents were modified for optimum reaction. In comparison to purified whole blood genomic DNA, the currently developed and optimized blood lysate method was found to be 95.5% less expensive, as well as being equally sensitive and specific for the molecular detection (PCR) of haemoparasites like <i>Babesia, Theileria</i>, <i>Trypanosoma</i> and rickettsiales in cattle, buffaloes, horses, and dogs. The assay was also demonstrated to be quick, less likely to cross-contaminate, and appropriate for use in laboratories with limited resources. Therefore, the currently developed and optimized blood lysate method could serve as a viable alternative to purified whole blood genomic DNA for molecular detection (PCR) of haemoparasites in animals particularly in resource-limited settings.</p>","PeriodicalId":7836,"journal":{"name":"Animal Biotechnology","volume":"35 1","pages":"2390935"},"PeriodicalIF":1.7000,"publicationDate":"2024-08-09","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":null,"platform":"Semanticscholar","paperid":null,"PeriodicalName":"Animal Biotechnology","FirstCategoryId":"97","ListUrlMain":"https://doi.org/10.1080/10495398.2024.2390935","RegionNum":3,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"2024/8/13 0:00:00","PubModel":"Epub","JCR":"Q2","JCRName":"AGRICULTURE, DAIRY & ANIMAL SCIENCE","Score":null,"Total":0}
引用次数: 0
Abstract
Haemoparasitic diseases constitute a significant constraint to economic livestock farming. Diagnostic techniques that are inexpensive, rapid, reliable, and precise are crucial for the management of diseases. In this context, PCR assays are very valuable yet expensive since the samples must be processed before being included in the PCR reaction. Accordingly, the goal of the current study was to lower the PCR costs without jeopardizing the assay's sensitivity and specificity. For that purpose, the alkaline solution was optimized for low cost and quick DNA extraction (blood lysate), and PCR reagents were modified for optimum reaction. In comparison to purified whole blood genomic DNA, the currently developed and optimized blood lysate method was found to be 95.5% less expensive, as well as being equally sensitive and specific for the molecular detection (PCR) of haemoparasites like Babesia, Theileria, Trypanosoma and rickettsiales in cattle, buffaloes, horses, and dogs. The assay was also demonstrated to be quick, less likely to cross-contaminate, and appropriate for use in laboratories with limited resources. Therefore, the currently developed and optimized blood lysate method could serve as a viable alternative to purified whole blood genomic DNA for molecular detection (PCR) of haemoparasites in animals particularly in resource-limited settings.
利用血液裂解液 PCR 对动物血液寄生虫进行分子鉴定:一种快速、廉价的全基因组 DNA 纯化替代方法。
血寄生虫病是制约经济畜牧业发展的一个重要因素。廉价、快速、可靠和精确的诊断技术对疾病管理至关重要。在这种情况下,PCR 检测非常有价值,但也非常昂贵,因为在将样本纳入 PCR 反应之前必须对其进行处理。因此,本研究的目标是在不影响检测灵敏度和特异性的前提下降低 PCR 成本。为此,对碱性溶液进行了优化,以实现低成本、快速的 DNA 提取(血液裂解液),并对 PCR 试剂进行了改良,以实现最佳反应。与纯化的全血基因组 DNA 相比,目前开发和优化的血液裂解液方法成本降低了 95.5%,而且在对牛、水牛、马和狗中的巴贝斯虫、丝虫、锥虫和立克次体等血液寄生虫进行分子检测(PCR)时具有同样的灵敏度和特异性。该检测方法还被证明快速、不易交叉感染,适合资源有限的实验室使用。因此,目前开发和优化的血液裂解液方法可作为纯化全血基因组 DNA 的可行替代方法,用于动物血液寄生虫的分子检测(PCR),尤其是在资源有限的环境中。
期刊介绍:
Biotechnology can be defined as any technique that uses living organisms (or parts of organisms like cells, genes, proteins) to make or modify products, to improve plants, animals or microorganisms for a specific use. Animal Biotechnology publishes research on the identification and manipulation of genes and their products, stressing applications in domesticated animals. The journal publishes full-length articles and short research communications, as well as comprehensive reviews. The journal also provides a forum for regulatory or scientific issues related to cell and molecular biology applied to animal biotechnology.
Submissions on the following topics are particularly welcome:
- Applied microbiology, immunogenetics and antibiotic resistance
- Genome engineering and animal models
- Comparative genomics
- Gene editing and CRISPRs
- Reproductive biotechnologies
- Synthetic biology and design of new genomes