Kinetic analysis of prothrombinase assembly and substrate delivery mechanisms

IF 16.4 1区 化学 Q1 CHEMISTRY, MULTIDISCIPLINARY Accounts of Chemical Research Pub Date : 2024-08-12 DOI:10.1016/j.jtbi.2024.111925
A.R. Gantseva , E.R. Gantseva , A.N. Sveshnikova , M.A. Panteleev , T.A. Kovalenko
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Abstract

Prothrombinase complex, composed of coagulation factors Xa (FXa) and Va (FVa) is a major enzyme of the blood coagulation network that produces thrombin via activation of its inactive precursor prothrombin (FII) on the surface of phospholipid membranes. However, pathways and mechanisms of prothrombinase formation and substrate delivery are still discussed. Here we designed a novel mathematical model that considered different potential pathways of FXa or FII binding (from the membrane or from solution) and analyzed the kinetics of thrombin formation in the presence of a wide range of reactants concentrations. We observed the inhibitory effect of large FVa concentrations and this effect was phospholipid concentration-dependent. We predicted that efficient FII activation occurred via formation of the ternary complex, in which FVa, FXa and FII were in the membrane-bound state. Prothrombin delivery was mostly membrane-dependent, but delivery from solution was predominant under conditions of phospholipid deficiency or FXa/FVa excess. Likewise, FXa delivery from solution was predominant in the case of FVa excess, but high FII did not switch the FXa delivery to the solution-dependent one. Additionally, the FXa delivery pathway did not depend on the phospholipid concentration, being the membrane-dependent one even in case of the phospholipid deficiency. These results suggest a flexible mechanism of prothrombinase functioning which utilizes different complex formation and even inhibitory mechanisms depending on conditions.

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凝血酶原组装和底物输送机制的动力学分析。
凝血酶原酶复合物由凝血因子 Xa(FXa)和 Va(FVa)组成,是血液凝固网络的主要酶,通过激活磷脂膜表面的非活性前体凝血酶原(FII)产生凝血酶。然而,凝血酶原形成和底物输送的途径和机制仍在讨论之中。在这里,我们设计了一个新的数学模型,该模型考虑了 FXa 或 FII 结合(来自膜或来自溶液)的不同潜在途径,并分析了在多种反应物浓度下凝血酶形成的动力学。我们观察到了高浓度 FVa 的抑制作用,而且这种作用与磷脂浓度有关。我们预测 FII 是通过形成三元复合物有效激活的,其中 FVa、FXa 和 FII 处于膜结合状态。凝血酶原的输送主要依赖于膜,但在磷脂缺乏或 FXa/FVa 过量的条件下,从溶液中的输送占主导地位。同样,在 FVa 过量的情况下,FXa 也主要从溶液中输送,但高 FII 并没有使 FXa 的输送转为依赖溶液。此外,FXa 的输送途径并不依赖于磷脂的浓度,即使在磷脂缺乏的情况下,FXa 的输送也是依赖于膜的。这些结果表明,凝血酶原酶的运行机制是灵活的,它会根据不同的条件利用不同的复合物形成机制,甚至是抑制机制。
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来源期刊
Accounts of Chemical Research
Accounts of Chemical Research 化学-化学综合
CiteScore
31.40
自引率
1.10%
发文量
312
审稿时长
2 months
期刊介绍: Accounts of Chemical Research presents short, concise and critical articles offering easy-to-read overviews of basic research and applications in all areas of chemistry and biochemistry. These short reviews focus on research from the author’s own laboratory and are designed to teach the reader about a research project. In addition, Accounts of Chemical Research publishes commentaries that give an informed opinion on a current research problem. Special Issues online are devoted to a single topic of unusual activity and significance. Accounts of Chemical Research replaces the traditional article abstract with an article "Conspectus." These entries synopsize the research affording the reader a closer look at the content and significance of an article. Through this provision of a more detailed description of the article contents, the Conspectus enhances the article's discoverability by search engines and the exposure for the research.
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