FPJA-Net: A Lightweight End-to-End Network for Sleep Stage Prediction Based on Feature Pyramid and Joint Attention.

IF 3.9 2区 生物学 Q1 MATHEMATICAL & COMPUTATIONAL BIOLOGY Interdisciplinary Sciences: Computational Life Sciences Pub Date : 2024-12-01 Epub Date: 2024-08-19 DOI:10.1007/s12539-024-00636-9
Zhi Liu, Qinhan Zhang, Sixin Luo, Meiqiao Qin
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Abstract

Sleep staging is the most crucial work before diagnosing and treating sleep disorders. Traditional manual sleep staging is time-consuming and depends on the skill of experts. Nowadays, automatic sleep staging based on deep learning attracts more and more scientific researchers. As we know, the salient waves in sleep signals contain the most important information for automatic sleep staging. However, the key information is not fully utilized in existing deep learning methods since most of them only use CNN or RNN which could not capture multi-scale features in salient waves effectively. To tackle this limitation, we propose a lightweight end-to-end network for sleep stage prediction based on feature pyramid and joint attention. The feature pyramid module is designed to effectively extract multi-scale features in salient waves, and these features are then fed to the joint attention module to closely attend to the channel and location information of the salient waves. The proposed network has much fewer parameters and significant performance improvement, which is better than the state-of-the-art results. The overall accuracy and macro F1 score on the public dataset Sleep-EDF39, Sleep-EDF153 and SHHS are 90.1%, 87.8%, 87.4%, 84.4% and 86.9%, 83.9%, respectively. Ablation experiments confirm the effectiveness of each module.

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FPJA-Net:基于特征金字塔和联合注意力的轻量级端到端睡眠阶段预测网络
睡眠分期是诊断和治疗睡眠障碍前最关键的工作。传统的人工睡眠分期耗时长,且依赖于专家的技术。如今,基于深度学习的自动睡眠分期吸引了越来越多的科研人员。我们知道,睡眠信号中的显著波包含了对自动睡眠分期最重要的信息。然而,由于现有的深度学习方法大多只使用 CNN 或 RNN,无法有效捕捉显著波的多尺度特征,因此无法充分利用这些关键信息。针对这一局限,我们提出了一种基于特征金字塔和联合注意力的轻量级端到端网络,用于预测睡眠阶段。特征金字塔模块旨在有效提取突出波的多尺度特征,然后将这些特征反馈给联合注意模块,以密切关注突出波的信道和位置信息。所提出的网络参数更少,性能提升显著,优于最先进的结果。在公开数据集 Sleep-EDF39、Sleep-EDF153 和 SHHS 上的总体准确率和宏观 F1 分数分别为 90.1%、87.8%、87.4%、84.4% 和 86.9%、83.9%。消融实验证实了每个模块的有效性。
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来源期刊
Interdisciplinary Sciences: Computational Life Sciences
Interdisciplinary Sciences: Computational Life Sciences MATHEMATICAL & COMPUTATIONAL BIOLOGY-
CiteScore
8.60
自引率
4.20%
发文量
55
期刊介绍: Interdisciplinary Sciences--Computational Life Sciences aims to cover the most recent and outstanding developments in interdisciplinary areas of sciences, especially focusing on computational life sciences, an area that is enjoying rapid development at the forefront of scientific research and technology. The journal publishes original papers of significant general interest covering recent research and developments. Articles will be published rapidly by taking full advantage of internet technology for online submission and peer-reviewing of manuscripts, and then by publishing OnlineFirstTM through SpringerLink even before the issue is built or sent to the printer. The editorial board consists of many leading scientists with international reputation, among others, Luc Montagnier (UNESCO, France), Dennis Salahub (University of Calgary, Canada), Weitao Yang (Duke University, USA). Prof. Dongqing Wei at the Shanghai Jiatong University is appointed as the editor-in-chief; he made important contributions in bioinformatics and computational physics and is best known for his ground-breaking works on the theory of ferroelectric liquids. With the help from a team of associate editors and the editorial board, an international journal with sound reputation shall be created.
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