Post-transfer adaptation of HGT-acquired genes and contribution to guanine metabolic diversification in land plants.

IF 9.4 1区 生物学 Q1 Agricultural and Biological Sciences New Phytologist Pub Date : 2024-08-21 DOI:10.1111/nph.20040
Jun-Jie Wu, Qian-Wen Deng, Yi-Yang Qiu, Chao Liu, Chen-Feng Lin, Ya-Lu Ru, Yue Sun, Jun Lai, Lu-Xian Liu, Xing-Xing Shen, Ronghui Pan, Yun-Peng Zhao
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Abstract

Horizontal gene transfer (HGT) is a major driving force in the evolution of prokaryotic and eukaryotic genomes. Despite recent advances in distribution and ecological importance, the extensive pattern, especially in seed plants, and post-transfer adaptation of HGT-acquired genes in land plants remain elusive. We systematically identified 1150 foreign genes in 522 land plant genomes that were likely acquired via at least 322 distinct transfers from nonplant donors and confirmed that recent HGT events were unevenly distributed between seedless and seed plants. HGT-acquired genes evolved to be more similar to native genes in terms of average intron length due to intron gains, and HGT-acquired genes containing introns exhibited higher expression levels than those lacking introns, suggesting that intron gains may be involved in the post-transfer adaptation of HGT in land plants. Functional validation of bacteria-derived gene GuaD in mosses and gymnosperms revealed that the invasion of foreign genes introduced a novel bypass of guanine degradation and resulted in the loss of native pathway genes in some gymnosperms, eventually shaping three major types of guanine metabolism in land plants. We conclude that HGT has played a critical role in land plant evolution.

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HGT 获取基因的转移后适应以及对陆生植物鸟嘌呤代谢多样化的贡献。
水平基因转移(HGT)是原核生物和真核生物基因组进化的主要驱动力。尽管最近在分布和生态重要性方面取得了进展,但陆生植物中 HGT 获得基因的广泛模式(尤其是在种子植物中)和转移后的适应性仍然难以捉摸。我们系统地鉴定了 522 个陆生植物基因组中的 1150 个外来基因,这些基因可能是通过至少 322 次不同的非植物供体转移获得的,并证实最近的 HGT 事件在无籽和有籽植物中分布不均。由于内含子增殖,HGT获得的基因在平均内含子长度方面与本地基因更为相似,而且含有内含子的HGT获得的基因比缺乏内含子的基因表现出更高的表达水平,这表明内含子增殖可能参与了陆生植物HGT转移后的适应过程。细菌衍生基因 GuaD 在苔藓植物和裸子植物中的功能验证表明,外来基因的入侵引入了一种新的鸟嘌呤降解旁路,并导致一些裸子植物中原生途径基因的缺失,最终形成了陆生植物鸟嘌呤代谢的三大类型。我们的结论是,HGT 在陆生植物进化中发挥了关键作用。
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来源期刊
New Phytologist
New Phytologist PLANT SCIENCES-
CiteScore
17.60
自引率
5.30%
发文量
728
审稿时长
1 months
期刊介绍: New Phytologist is a leading publication that showcases exceptional and groundbreaking research in plant science and its practical applications. With a focus on five distinct sections - Physiology & Development, Environment, Interaction, Evolution, and Transformative Plant Biotechnology - the journal covers a wide array of topics ranging from cellular processes to the impact of global environmental changes. We encourage the use of interdisciplinary approaches, and our content is structured to reflect this. Our journal acknowledges the diverse techniques employed in plant science, including molecular and cell biology, functional genomics, modeling, and system-based approaches, across various subfields.
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