Structural basis for FN3K-mediated protein deglycation

IF 4.4 2区 生物学 Q2 BIOCHEMISTRY & MOLECULAR BIOLOGY Structure Pub Date : 2024-08-21 DOI:10.1016/j.str.2024.07.018
Jameela Lokhandwala, Jenet K. Matlack, Tracess B. Smalley, Robert E. Miner, Timothy H. Tran, Jennifer M. Binning
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Abstract

Protein glycation is a universal, non-enzymatic modification that occurs when a sugar covalently attaches to a primary amine. These spontaneous modifications may have deleterious or regulatory effects on protein function, and their removal is mediated by the conserved metabolic kinase fructosamine-3-kinase (FN3K). Despite its crucial role in protein repair, we currently have a poor understanding of how FN3K engages or phosphorylates its substrates. By integrating structural biology and biochemistry, we elucidated the catalytic mechanism for FN3K-mediated protein deglycation. Our work identifies key amino acids required for binding and phosphorylating glycated substrates and reveals the molecular basis of an evolutionarily conserved protein repair pathway. Additional structural-functional studies revealed unique structural features of human FN3K as well as differences in the dimerization behavior and regulation of FN3K family members. Our findings improve our understanding of the structure of FN3K and its catalytic mechanism, which opens new avenues for therapeutically targeting FN3K.

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FN3K 介导蛋白质降解的结构基础
蛋白质糖化是一种普遍的非酶修饰,当糖与伯胺共价连接时就会发生糖化。这些自发修饰可能会对蛋白质功能产生有害影响或调节作用,其清除是由保守的代谢激酶果糖胺-3-激酶(FN3K)介导的。尽管果糖胺-3-激酶在蛋白质修复中起着至关重要的作用,但我们目前对 FN3K 如何参与或磷酸化其底物还知之甚少。通过整合结构生物学和生物化学,我们阐明了 FN3K 介导的蛋白质降解的催化机制。我们的工作确定了糖化底物结合和磷酸化所需的关键氨基酸,揭示了进化保守的蛋白质修复途径的分子基础。其他结构-功能研究揭示了人类 FN3K 的独特结构特征以及 FN3K 家族成员在二聚化行为和调控方面的差异。我们的研究结果增进了我们对 FN3K 结构及其催化机理的了解,为针对 FN3K 的治疗开辟了新途径。
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来源期刊
Structure
Structure 生物-生化与分子生物学
CiteScore
8.90
自引率
1.80%
发文量
155
审稿时长
3-8 weeks
期刊介绍: Structure aims to publish papers of exceptional interest in the field of structural biology. The journal strives to be essential reading for structural biologists, as well as biologists and biochemists that are interested in macromolecular structure and function. Structure strongly encourages the submission of manuscripts that present structural and molecular insights into biological function and mechanism. Other reports that address fundamental questions in structural biology, such as structure-based examinations of protein evolution, folding, and/or design, will also be considered. We will consider the application of any method, experimental or computational, at high or low resolution, to conduct structural investigations, as long as the method is appropriate for the biological, functional, and mechanistic question(s) being addressed. Likewise, reports describing single-molecule analysis of biological mechanisms are welcome. In general, the editors encourage submission of experimental structural studies that are enriched by an analysis of structure-activity relationships and will not consider studies that solely report structural information unless the structure or analysis is of exceptional and broad interest. Studies reporting only homology models, de novo models, or molecular dynamics simulations are also discouraged unless the models are informed by or validated by novel experimental data; rationalization of a large body of existing experimental evidence and making testable predictions based on a model or simulation is often not considered sufficient.
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