Harnessing large language models' zero-shot and few-shot learning capabilities for regulatory research.

IF 6.8 2区 生物学 Q1 BIOCHEMICAL RESEARCH METHODS Briefings in bioinformatics Pub Date : 2024-07-25 DOI:10.1093/bib/bbae354
Hamed Meshkin, Joel Zirkle, Ghazal Arabidarrehdor, Anik Chaturbedi, Shilpa Chakravartula, John Mann, Bradlee Thrasher, Zhihua Li
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Abstract

Large language models (LLMs) are sophisticated AI-driven models trained on vast sources of natural language data. They are adept at generating responses that closely mimic human conversational patterns. One of the most notable examples is OpenAI's ChatGPT, which has been extensively used across diverse sectors. Despite their flexibility, a significant challenge arises as most users must transmit their data to the servers of companies operating these models. Utilizing ChatGPT or similar models online may inadvertently expose sensitive information to the risk of data breaches. Therefore, implementing LLMs that are open source and smaller in scale within a secure local network becomes a crucial step for organizations where ensuring data privacy and protection has the highest priority, such as regulatory agencies. As a feasibility evaluation, we implemented a series of open-source LLMs within a regulatory agency's local network and assessed their performance on specific tasks involving extracting relevant clinical pharmacology information from regulatory drug labels. Our research shows that some models work well in the context of few- or zero-shot learning, achieving performance comparable, or even better than, neural network models that needed thousands of training samples. One of the models was selected to address a real-world issue of finding intrinsic factors that affect drugs' clinical exposure without any training or fine-tuning. In a dataset of over 700 000 sentences, the model showed a 78.5% accuracy rate. Our work pointed to the possibility of implementing open-source LLMs within a secure local network and using these models to perform various natural language processing tasks when large numbers of training examples are unavailable.

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利用大型语言模型的零点学习和少量学习能力开展监管研究。
大型语言模型(LLM)是在大量自然语言数据基础上训练而成的复杂人工智能驱动模型。它们善于生成近似人类对话模式的回复。最著名的例子之一是 OpenAI 的 ChatGPT,它已被广泛应用于各个领域。尽管它们具有灵活性,但由于大多数用户必须将数据传输到运营这些模型的公司的服务器上,因此也带来了巨大的挑战。在线使用 ChatGPT 或类似模型可能会无意中将敏感信息暴露在数据泄露的风险之下。因此,在安全的本地网络中实施开源且规模较小的 LLM,对于确保数据隐私和保护具有最高优先级的组织(如监管机构)来说是至关重要的一步。作为可行性评估,我们在监管机构的本地网络中实施了一系列开源 LLM,并评估了它们在从监管药物标签中提取相关临床药理信息的特定任务中的表现。我们的研究表明,一些模型在很少或零次学习的情况下也能很好地工作,其性能可与需要数千个训练样本的神经网络模型相媲美,甚至更好。我们选择了其中一个模型来解决现实世界中的一个问题,即在没有任何训练或微调的情况下找到影响药物临床暴露的内在因素。在一个包含 70 多万个句子的数据集中,该模型的准确率达到了 78.5%。我们的工作表明,可以在安全的本地网络中实施开源 LLM,并在没有大量训练实例的情况下使用这些模型执行各种自然语言处理任务。
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来源期刊
Briefings in bioinformatics
Briefings in bioinformatics 生物-生化研究方法
CiteScore
13.20
自引率
13.70%
发文量
549
审稿时长
6 months
期刊介绍: Briefings in Bioinformatics is an international journal serving as a platform for researchers and educators in the life sciences. It also appeals to mathematicians, statisticians, and computer scientists applying their expertise to biological challenges. The journal focuses on reviews tailored for users of databases and analytical tools in contemporary genetics, molecular and systems biology. It stands out by offering practical assistance and guidance to non-specialists in computerized methodologies. Covering a wide range from introductory concepts to specific protocols and analyses, the papers address bacterial, plant, fungal, animal, and human data. The journal's detailed subject areas include genetic studies of phenotypes and genotypes, mapping, DNA sequencing, expression profiling, gene expression studies, microarrays, alignment methods, protein profiles and HMMs, lipids, metabolic and signaling pathways, structure determination and function prediction, phylogenetic studies, and education and training.
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