Insights from Ca2+→Sr2+ substitution on the mechanism of O-O bond formation in photosystem II.

IF 2.9 3区 生物学 Q2 PLANT SCIENCES Photosynthesis Research Pub Date : 2024-08-26 DOI:10.1007/s11120-024-01117-2
Gabriel Bury, Yulia Pushkar
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Abstract

In recent years, there has been a steady interest in unraveling the intricate mechanistic details of water oxidation mechanism in photosynthesis. Despite the substantial progress made over several decades, a comprehensive understanding of the precise kinetics underlying O-O bond formation and subsequent evolution remains elusive. However, it is well-established that the oxygen evolving complex (OEC), specifically the CaMn4O5 cluster, plays a crucial role in O-O bond formation, undergoing a series of four oxidative events as it progresses through the S-states of the Kok cycle. To gain further insights into the OEC, researchers have explored the substitution of the Ca2+ cofactor with strontium (Sr), the sole atomic replacement capable of retaining oxygen-evolving activity. Empirical investigations utilizing spectroscopic techniques such as XAS, XRD, EPR, FTIR, and XANES have been conducted to probe the structural consequences of Ca2+→Sr2+ substitution. In parallel, the development of DFT and QM/MM computational models has explored different oxidation and protonation states, as well as variations in ligand coordination at the catalytic center involving amino acid residues. In this review, we critically evaluate and integrate these computational and spectroscopic approaches, focusing on the structural and mechanistic implications of Ca2+→Sr2+ substitution in PS II. We contribute DFT modelling and simulate EXAFS Fourier transforms of Sr-substituted OEC, analyzing promising structures of the S3 state. Through the combination of computational modeling and spectroscopic investigations, valuable insights have been gained, developing a deeper understanding of the photosynthetic process.

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Ca2+→Sr2+ 置换对光合系统 II 中 O-O 键形成机制的启示。
近年来,人们对揭示光合作用中水氧化机制的复杂机理细节始终保持着浓厚的兴趣。尽管几十年来取得了长足的进步,但对 O-O 键形成和随后演变的精确动力学的全面了解仍然遥遥无期。不过,氧演化复合物(OEC),特别是 CaMn4O5 团簇,在 O-O 键形成过程中发挥着关键作用,在通过 Kok 循环的 S 态时经历了一系列四次氧化事件,这一点已得到公认。为了进一步深入了解 OEC,研究人员探索了用锶(Sr)替代 Ca2+ 辅因子的方法,锶是唯一能够保持氧发生活性的原子替代物。研究人员利用 XAS、XRD、EPR、傅立叶变换红外光谱和 XANES 等光谱技术进行了经验性研究,以探究 Ca2+→Sr2+ 置换的结构后果。与此同时,DFT 和 QM/MM 计算模型的开发也探索了不同的氧化态和质子态,以及涉及氨基酸残基的催化中心配体配位的变化。在这篇综述中,我们对这些计算和光谱方法进行了批判性评估和整合,重点关注 PS II 中 Ca2+→Sr2+ 取代的结构和机理影响。我们建立了 DFT 模型,并模拟了 Sr 取代的 OEC 的 EXAFS 傅立叶变换,分析了 S3 状态的可能结构。通过将计算建模与光谱研究相结合,我们获得了宝贵的见解,加深了对光合作用过程的理解。
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来源期刊
Photosynthesis Research
Photosynthesis Research 生物-植物科学
CiteScore
6.90
自引率
8.10%
发文量
91
审稿时长
4.5 months
期刊介绍: Photosynthesis Research is an international journal open to papers of merit dealing with both basic and applied aspects of photosynthesis. It covers all aspects of photosynthesis research, including, but not limited to, light absorption and emission, excitation energy transfer, primary photochemistry, model systems, membrane components, protein complexes, electron transport, photophosphorylation, carbon assimilation, regulatory phenomena, molecular biology, environmental and ecological aspects, photorespiration, and bacterial and algal photosynthesis.
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