The surface tension of Martini 3 water mixtures.

IF 3.1 2区 化学 Q3 CHEMISTRY, PHYSICAL Journal of Chemical Physics Pub Date : 2024-08-28 DOI:10.1063/5.0221199
Lorenzo Iannetti, Sonia Cambiaso, Fabio Rasera, Alberto Giacomello, Giulia Rossi, Davide Bochicchio, Antonio Tinti
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Abstract

The Martini model, a coarse-grained forcefield for biomolecular simulations, has experienced a vast increase in popularity in the past decade. Its building-block approach balances computational efficiency with high chemical specificity, enabling the simulation of organic and inorganic molecules. The modeling of coarse-grained beads as Lennard-Jones particles poses challenges for the accurate reproduction of liquid-vapor interfacial properties, which are crucial in various applications, especially in the case of water. The latest version of the forcefield introduces refined interaction parameters for water beads, tackling the well-known artifact of Martini water freezing at room temperature. In addition, multiple sizes of water beads are available for simulating the solvation of small cavities, including the smallest pockets of proteins. This work focuses on studying the interfacial properties of Martini water, including surface tension and surface thickness. Employing the test-area method, we systematically compute the liquid-vapor surface tension across various combinations of water bead sizes and for temperatures from 300 to 350 K. These findings are of interest to the Martini community as they allow users to account for the low interfacial tension of Martini water by properly adjusting observables computed via coarse-grained simulations to allow for accurate matching against all-atom or experimental results. Surface tension data are also interpreted in terms of local enrichment of the various mixture components at the liquid-vapor interface by means of Gibbs' adsorption formalism. Finally, the critical scaling of the Martini surface tension with temperature is reported to be consistent with the critical exponent of the 3D Ising universality class.

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Martini 3 水混合物的表面张力。
马蒂尼模型是一种用于生物分子模拟的粗粒度力场,在过去十年中大受欢迎。它的积木式方法兼顾了计算效率和高化学特异性,能够模拟有机和无机分子。作为伦纳德-琼斯粒子的粗粒珠子建模对准确再现液体-蒸汽界面特性提出了挑战,而这些特性在各种应用中都至关重要,尤其是在水的情况下。最新版本的力场引入了细化的水珠相互作用参数,解决了众所周知的马蒂尼水在室温下冻结的问题。此外,还提供了多种尺寸的水珠,用于模拟小空腔(包括蛋白质的最小口袋)的溶解。这项工作的重点是研究马天尼水的界面特性,包括表面张力和表面厚度。我们采用测试区域法,系统地计算了不同水珠尺寸组合和 300 至 350 K 温度下的液体-蒸汽表面张力。这些发现引起了马天尼社区的兴趣,因为它们允许用户通过适当调整粗粒度模拟计算的观测值来解释马天尼水的低界面张力,以便与全原子或实验结果准确匹配。表面张力数据还可以通过吉布斯吸附形式主义,从液气界面各种混合物成分的局部富集角度进行解释。最后,报告了马尔蒂尼表面张力随温度变化的临界比例与三维伊辛普遍性类的临界指数相一致。
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来源期刊
Journal of Chemical Physics
Journal of Chemical Physics 物理-物理:原子、分子和化学物理
CiteScore
7.40
自引率
15.90%
发文量
1615
审稿时长
2 months
期刊介绍: The Journal of Chemical Physics publishes quantitative and rigorous science of long-lasting value in methods and applications of chemical physics. The Journal also publishes brief Communications of significant new findings, Perspectives on the latest advances in the field, and Special Topic issues. The Journal focuses on innovative research in experimental and theoretical areas of chemical physics, including spectroscopy, dynamics, kinetics, statistical mechanics, and quantum mechanics. In addition, topical areas such as polymers, soft matter, materials, surfaces/interfaces, and systems of biological relevance are of increasing importance. Topical coverage includes: Theoretical Methods and Algorithms Advanced Experimental Techniques Atoms, Molecules, and Clusters Liquids, Glasses, and Crystals Surfaces, Interfaces, and Materials Polymers and Soft Matter Biological Molecules and Networks.
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