The Crow-Kimura evolution model in case of asymmetric mutation and recombination

IF 4.6 2区 物理与天体物理 Q1 PHYSICS, MULTIDISCIPLINARY Chinese Journal of Physics Pub Date : 2024-08-13 DOI:10.1016/j.cjph.2024.08.015
Vladimir Suvorov , Hirobumi Mineo , David B. Saakian
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Abstract

The mutation and recombination often have different rates for forward and backward processes and this study explores the less common case of asymmetric mutation and recombination rates. The primary focus is on analyzing the error threshold transition in the context of asymmetric mutations. We investigate how the error threshold changes in the case of a single peak fitness landscape. We analyze how surplus (the availability of beneficial mutations) changes with the degree of asymmetry in mutation and recombination rates. The model is extended to include asymmetric recombination (horizontal gene transfer). We focus on the complex interplay between mutation and recombination rates in asymmetric scenarios and their effects on error thresholds, surplus, mean fitness, and other key aspects of evolutionary dynamics. The findings contribute to a more nuanced understanding of evolution in situations where biological processes do not follow the simplifying assumption of symmetric rates.

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不对称突变和重组情况下的 Crow-Kimura 进化模型
突变和重组在前向和后向过程中通常具有不同的速率,本研究探讨了不对称突变和重组速率这种不太常见的情况。主要重点是分析非对称突变背景下的误差阈值转换。我们研究了错误阈值在单峰适应度景观情况下的变化。我们分析了剩余(有益突变的可用性)如何随着突变率和重组率的不对称程度而变化。该模型被扩展到包括非对称重组(水平基因转移)。我们重点研究了非对称情景下突变率和重组率之间复杂的相互作用,以及它们对误差阈值、剩余、平均适合度和进化动态的其他关键方面的影响。这些发现有助于人们更细致地理解生物进化过程不遵循对称率这一简化假设的情况。
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来源期刊
Chinese Journal of Physics
Chinese Journal of Physics 物理-物理:综合
CiteScore
8.50
自引率
10.00%
发文量
361
审稿时长
44 days
期刊介绍: The Chinese Journal of Physics publishes important advances in various branches in physics, including statistical and biophysical physics, condensed matter physics, atomic/molecular physics, optics, particle physics and nuclear physics. The editors welcome manuscripts on: -General Physics: Statistical and Quantum Mechanics, etc.- Gravitation and Astrophysics- Elementary Particles and Fields- Nuclear Physics- Atomic, Molecular, and Optical Physics- Quantum Information and Quantum Computation- Fluid Dynamics, Nonlinear Dynamics, Chaos, and Complex Networks- Plasma and Beam Physics- Condensed Matter: Structure, etc.- Condensed Matter: Electronic Properties, etc.- Polymer, Soft Matter, Biological, and Interdisciplinary Physics. CJP publishes regular research papers, feature articles and review papers.
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