Exploring the role of the residues into catalytic cavity of inulosucrase from Leuconostoc citreum CW28.

IF 7.7 1区 化学 Q1 BIOCHEMISTRY & MOLECULAR BIOLOGY International Journal of Biological Macromolecules Pub Date : 2024-11-01 Epub Date: 2024-08-29 DOI:10.1016/j.ijbiomac.2024.135159
Ingrid Mercado-Del Río, Martin González-Andrade, Francisco Vera-López Portillo, Clarita Olvera-Carranza
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Abstract

Inulosucrases are enzymes capable of synthesizing inulin polymers using sucrose as the main substrate. The enzymatic activity relies on the catalytic triad within the active site and residues responsible for substrate recognition and orientation, termed carbohydrate-binding subsites. This study investigates the role of specific residues within the catalytic cavity of a truncated version of IslA4 in enzymatic catalysis. Mutants at residues S425, L499, A602, R618, F619, Y676, Y692, and R696 were constructed and characterized. Characterization results, and in silico structural comparison with other fructansucrases, reveal these residues' functional significance in catalysis. Residue S425 belongs to subsite -1; residues R618 and Y692 are part of subsite +1, and residue R696 belongs to subsites +1 and +2. Residues L499 and A602 are support residues; the former favors the formation of the fructosyl-enzyme intermediate, while the latter stabilizes the acid/base catalyst during catalysis. Residues Y676 and F619 may participate in stabilizing residues at -1/+1 subsites. This study represents the first comprehensive exploration of the structural determinants essential for enzymatic function in the inulosucrase of Leuconostoc citreum, and proposes the identity of residues involved in the -1 to +2 subsites.

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探索柠檬雷氏亮球菌 CW28 的肠溶酶催化空腔残基的作用。
菊粉糖酶是一种能够以蔗糖为主要底物合成菊粉聚合物的酶。酶的活性依赖于活性位点内的催化三元组以及负责底物识别和定向的残基(称为碳水化合物结合亚位点)。本研究调查了截短版 IslA4 催化空腔内特定残基在酶催化中的作用。研究人员构建并鉴定了 S425、L499、A602、R618、F619、Y676、Y692 和 R696 残基的突变体。表征结果以及与其他果糖琥珀酸酶的硅学结构比较揭示了这些残基在催化过程中的功能意义。残基 S425 属于子位点-1;残基 R618 和 Y692 属于子位点 +1 的一部分,残基 R696 属于子位点 +1 和 +2。残基 L499 和 A602 是支持残基;前者有利于果糖基酶中间体的形成,后者则在催化过程中稳定酸/碱催化剂。Y676和F619可能参与稳定-1/+1亚位点的残基。这项研究首次全面探讨了柠檬酸亮菌素酶(inulosucrase of Leuconostoc citreum)中对酶功能至关重要的结构决定因素,并提出了参与-1至+2亚位点的残基的身份。
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来源期刊
International Journal of Biological Macromolecules
International Journal of Biological Macromolecules 生物-生化与分子生物学
CiteScore
13.70
自引率
9.80%
发文量
2728
审稿时长
64 days
期刊介绍: The International Journal of Biological Macromolecules is a well-established international journal dedicated to research on the chemical and biological aspects of natural macromolecules. Focusing on proteins, macromolecular carbohydrates, glycoproteins, proteoglycans, lignins, biological poly-acids, and nucleic acids, the journal presents the latest findings in molecular structure, properties, biological activities, interactions, modifications, and functional properties. Papers must offer new and novel insights, encompassing related model systems, structural conformational studies, theoretical developments, and analytical techniques. Each paper is required to primarily focus on at least one named biological macromolecule, reflected in the title, abstract, and text.
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