Structural analysis of a ligand-triggered intermolecular disulfide switch in a major latex protein from opium poppy.

IF 2.6 4区 生物学 Q2 BIOCHEMICAL RESEARCH METHODS Acta Crystallographica. Section D, Structural Biology Pub Date : 2024-09-01 Epub Date: 2024-08-29 DOI:10.1107/S2059798324007733
Samuel C Carr, Peter J Facchini, Kenneth K S Ng
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Abstract

Several proteins from plant pathogenesis-related family 10 (PR10) are highly abundant in the latex of opium poppy and have recently been shown to play diverse and important roles in the biosynthesis of benzylisoquinoline alkaloids (BIAs). The recent determination of the first crystal structures of PR10-10 showed how large conformational changes in a surface loop and adjacent β-strand are coupled to the binding of BIA compounds to the central hydrophobic binding pocket. A more detailed analysis of these conformational changes is now reported to further clarify how ligand binding is coupled to the formation and cleavage of an intermolecular disulfide bond that is only sterically allowed when the BIA binding pocket is empty. To decouple ligand binding from disulfide-bond formation, each of the two highly conserved cysteine residues (Cys59 and Cys155) in PR10-10 was replaced with serine using site-directed mutagenesis. Crystal structures of the Cys59Ser mutant were determined in the presence of papaverine and in the absence of exogenous BIA compounds. A crystal structure of the Cys155Ser mutant was also determined in the absence of exogenous BIA compounds. All three of these crystal structures reveal conformations similar to that of wild-type PR10-10 with bound BIA compounds. In the absence of exogenous BIA compounds, the Cys59Ser and Cys155Ser mutants appear to bind an unidentified ligand or mixture of ligands that was presumably introduced during expression of the proteins in Escherichia coli. The analysis of conformational changes triggered by the binding of BIA compounds suggests a molecular mechanism coupling ligand binding to the disruption of an intermolecular disulfide bond. This mechanism may be involved in the regulation of biosynthetic reactions in plants and possibly other organisms.

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罂粟主要乳胶蛋白中配体触发的分子间二硫化物开关的结构分析。
植物致病相关家族 10(PR10)的几种蛋白质在罂粟乳汁中含量很高,最近的研究表明,它们在苄基异喹啉生物碱(BIA)的生物合成过程中发挥着多种多样的重要作用。最近首次测定的 PR10-10 晶体结构表明,表面环路和相邻 β 链中的大量构象变化是如何与 BIA 化合物结合到中央疏水结合袋中的。现报告对这些构象变化进行了更详细的分析,以进一步阐明配体结合是如何与分子间二硫键的形成和裂解相耦合的。为了使配体结合与二硫键的形成脱钩,利用定点突变将 PR10-10 中两个高度保守的半胱氨酸残基(Cys59 和 Cys155)分别替换为丝氨酸。在有木蝴蝶碱存在和没有外源 BIA 化合物的情况下,测定了 Cys59Ser 突变体的晶体结构。在没有外源 BIA 化合物的情况下,还测定了 Cys155Ser 突变体的晶体结构。这三种晶体结构显示的构象都与结合了 BIA 化合物的野生型 PR10-10 相似。在没有外源 BIA 化合物的情况下,Cys59Ser 和 Cys155Ser 突变体似乎与一种未知配体或配体混合物结合,这种配体可能是在大肠杆菌中表达蛋白质时引入的。对 BIA 化合物结合所引发的构象变化的分析表明,配体结合与分子间二硫键的破坏之间存在一种分子机制。这种机制可能涉及植物和其他生物体内生物合成反应的调控。
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来源期刊
Acta Crystallographica. Section D, Structural Biology
Acta Crystallographica. Section D, Structural Biology BIOCHEMICAL RESEARCH METHODSBIOCHEMISTRY &-BIOCHEMISTRY & MOLECULAR BIOLOGY
CiteScore
4.50
自引率
13.60%
发文量
216
期刊介绍: Acta Crystallographica Section D welcomes the submission of articles covering any aspect of structural biology, with a particular emphasis on the structures of biological macromolecules or the methods used to determine them. Reports on new structures of biological importance may address the smallest macromolecules to the largest complex molecular machines. These structures may have been determined using any structural biology technique including crystallography, NMR, cryoEM and/or other techniques. The key criterion is that such articles must present significant new insights into biological, chemical or medical sciences. The inclusion of complementary data that support the conclusions drawn from the structural studies (such as binding studies, mass spectrometry, enzyme assays, or analysis of mutants or other modified forms of biological macromolecule) is encouraged. Methods articles may include new approaches to any aspect of biological structure determination or structure analysis but will only be accepted where they focus on new methods that are demonstrated to be of general applicability and importance to structural biology. Articles describing particularly difficult problems in structural biology are also welcomed, if the analysis would provide useful insights to others facing similar problems.
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