Development of a loop-mediated isothermal amplification (LAMP) assay for rapid and visual detection of Anguillid herpesvirus 1

IF 2.2 4区 医学 Q3 BIOCHEMICAL RESEARCH METHODS Journal of virological methods Pub Date : 2024-08-29 DOI:10.1016/j.jviromet.2024.115014
Qiang Chen , Li-Juan Zhang , Tie-Ying Song, Jun-Qing Ge
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Abstract

China has the largest aquaculture eel production in the world. High-density cultivation pattern often results in an outbreak of epidemic diseases. Since the 1990s, eel “mucus sloughing and hemorrhagic septicemia disease” was often broke out in China, and brought huge economic losses to eel breeders. Anguillid herpesvirus 1 (AngHV) was detected and isolated from the diseased eel, and proved to be the pathogen of the disease. In this study, a loop-mediated isothermal amplification (LAMP) assay was developed for rapid, sensitive, and specific detection of AngHV. A set of six primers targeting the ORF51 gene of AngHV was designed, which could effectively detect purified AngHV virions, AngHV-infected cells, or eel tissue samples. The suitable reaction temperature is 63℃, and the reaction time is 40 min. There was no cross-reaction with eel and other fish viruses, including Infectious pancreatic necrosis virus (IPNV), Marine birnavirus (MABV), Rana grylio virus (RGV), Cyprinid herpesvirus 3 (CyHV-3), and Eel iridovirus (EIV). The lower detection limit of the AngHV LAMP assay is 10 copies of AngHV genome DNA, which is at least 100 times more sensitive than conventional PCR in detecting AngHV. The assay could effectively detect AngHV from collected samples with typical clinical symptoms of AngHV infection. It suggested that the LAMP assay could be used in specific detection of AngHV and has great potential for early diagnosis of AngHV infection in the farm.

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开发用于快速直观检测安圭拉疱疹病毒 1 的环介导等温扩增分析法(LAMP)。
中国是世界上鳗鱼养殖产量最大的国家。高密度养殖模式往往导致疫病爆发。20 世纪 90 年代以来,我国经常爆发黄鳝 "粘液蜕皮和出血性败血症",给黄鳝养殖户带来了巨大的经济损失。从发病鳗鱼中检测并分离出的鳗鲡疱疹病毒 1(AngHV)被证明是该病的病原体。本研究开发了一种环介导等温扩增(LAMP)检测方法,用于快速、灵敏和特异性地检测 AngHV。该方法设计了一套针对 AngHV ORF51 基因的六种引物,可有效检测纯化的 AngHV 病毒、AngHV 感染细胞或鳗鱼组织样本。适宜的反应温度为 63℃,反应时间为 40 分钟。与鳗鱼和其他鱼类病毒(包括传染性胰腺坏死病毒(IPNV)、海洋桦树病毒(MABV)、Rana grylio病毒(RGV)、鲤科疱疹病毒3(CyHV-3)和鳗鲡虹彩病毒(EIV))没有交叉反应。AngHV LAMP 检测方法的检测下限为 10 个 AngHV 基因组 DNA 拷贝,比传统 PCR 检测 AngHV 的灵敏度高出至少 100 倍。该检测方法能从采集的具有典型临床症状的AngHV感染样本中有效地检测出AngHV。结果表明,LAMP 检测法可用于特异性检测 AngHV,在养殖场早期诊断 AngHV 感染方面具有巨大潜力。
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来源期刊
CiteScore
5.80
自引率
0.00%
发文量
209
审稿时长
41 days
期刊介绍: The Journal of Virological Methods focuses on original, high quality research papers that describe novel and comprehensively tested methods which enhance human, animal, plant, bacterial or environmental virology and prions research and discovery. The methods may include, but not limited to, the study of: Viral components and morphology- Virus isolation, propagation and development of viral vectors- Viral pathogenesis, oncogenesis, vaccines and antivirals- Virus replication, host-pathogen interactions and responses- Virus transmission, prevention, control and treatment- Viral metagenomics and virome- Virus ecology, adaption and evolution- Applied virology such as nanotechnology- Viral diagnosis with novelty and comprehensive evaluation. We seek articles, systematic reviews, meta-analyses and laboratory protocols that include comprehensive technical details with statistical confirmations that provide validations against current best practice, international standards or quality assurance programs and which advance knowledge in virology leading to improved medical, veterinary or agricultural practices and management.
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