Graph neural network coarse-grain force field for the molecular crystal RDX

IF 9.4 1区 材料科学 Q1 CHEMISTRY, PHYSICAL npj Computational Materials Pub Date : 2024-09-07 DOI:10.1038/s41524-024-01407-2
Brian H. Lee, James P. Larentzos, John K. Brennan, Alejandro Strachan
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Abstract

Condense phase molecular systems organize in wide range of distinct molecular configurations, including amorphous melt and glass as well as crystals often exhibiting polymorphism, that originate from their intricate intra- and intermolecular forces. While accurate coarse-grain (CG) models for these materials are critical to understand phenomena beyond the reach of all-atom simulations, current models cannot capture the diversity of molecular structures. We introduce a generally applicable approach to develop CG force fields for molecular crystals combining graph neural networks (GNN) and data from an all-atom simulations and apply it to the high-energy density material RDX. We address the challenge of expanding the training data with relevant configurations via an iterative procedure that performs CG molecular dynamics of processes of interest and reconstructs the atomistic configurations using a pre-trained neural network decoder. The multi-site CG model uses a GNN architecture constructed to satisfy translational invariance and rotational covariance for forces. The resulting model captures both crystalline and amorphous states for a wide range of temperatures and densities.

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分子晶体 RDX 的图神经网络粗粒力场
凝结相分子体系具有多种不同的分子构型,包括无定形熔体和玻璃以及通常表现出多态性的晶体,这些构型源于其错综复杂的分子内力和分子间力。虽然这些材料的精确粗晶粒(CG)模型对于理解全原子模拟无法达到的现象至关重要,但目前的模型无法捕捉分子结构的多样性。我们介绍了一种普遍适用的方法,结合图神经网络(GNN)和来自全原子模拟的数据来开发分子晶体的 CG 力场,并将其应用于高能量密度材料 RDX。我们通过一个迭代程序,对感兴趣的过程执行 CG 分子动力学,并使用预先训练好的神经网络解码器重建原子构型,从而解决了用相关构型扩展训练数据的难题。多位点 CG 模型采用 GNN 架构,以满足力的平移不变性和旋转协方差。由此产生的模型可以捕捉到各种温度和密度下的结晶和无定形状态。
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来源期刊
npj Computational Materials
npj Computational Materials Mathematics-Modeling and Simulation
CiteScore
15.30
自引率
5.20%
发文量
229
审稿时长
6 weeks
期刊介绍: npj Computational Materials is a high-quality open access journal from Nature Research that publishes research papers applying computational approaches for the design of new materials and enhancing our understanding of existing ones. The journal also welcomes papers on new computational techniques and the refinement of current approaches that support these aims, as well as experimental papers that complement computational findings. Some key features of npj Computational Materials include a 2-year impact factor of 12.241 (2021), article downloads of 1,138,590 (2021), and a fast turnaround time of 11 days from submission to the first editorial decision. The journal is indexed in various databases and services, including Chemical Abstracts Service (ACS), Astrophysics Data System (ADS), Current Contents/Physical, Chemical and Earth Sciences, Journal Citation Reports/Science Edition, SCOPUS, EI Compendex, INSPEC, Google Scholar, SCImago, DOAJ, CNKI, and Science Citation Index Expanded (SCIE), among others.
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