Remarkable Insensitivity of Protein Diffusion to Protein Charge

IF 4.8 2区 化学 Q2 CHEMISTRY, PHYSICAL The Journal of Physical Chemistry Letters Pub Date : 2024-09-11 DOI:10.1021/acs.jpclett.4c02062
Setare Mostajabi Sarhangi, Dmitry V. Matyushov
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Abstract

Friction to translational diffusion of ionic particles in polar liquids should scale linearly with the squared ion charge, according to standard theories. Substantial slowing of translational diffusion is expected for proteins in water. In contrast, our simulations of charge mutants of green fluorescent proteins in water show remarkable insensitivity of the translational diffusion constant to protein’s charge in the range of charges between −29 and +35. The friction coefficient is given as a product of the force variance and the memory function relaxation time. We find remarkably accurate equality between the variance of the electrostatic force and the negative cross-correlation of the electrostatic and van der Waals forces. The charge invariance of the diffusion constant is a combined effect of the force variance and relaxation time invariances with the protein charge. The temperature dependence of the protein diffusion constant is highly non-Arrhenius, with a fragile-to-strong crossover at the glass transition.

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蛋白质扩散对蛋白质电荷的显著不敏感性
根据标准理论,极性液体中离子粒子平移扩散的摩擦力应与离子电荷的平方成线性关系。预计蛋白质在水中的平移扩散速度会大大减慢。与此相反,我们对水中绿色荧光蛋白的电荷突变体进行的模拟显示,在电荷介于 -29 和 +35 之间的范围内,平移扩散常数对蛋白质电荷的敏感性明显降低。摩擦系数是力方差与记忆功能弛豫时间的乘积。我们发现静电力的方差与静电力和范德华力的负交叉相关性之间存在着非常精确的相等关系。扩散常数的电荷不变性是力方差和弛豫时间不变性与蛋白质电荷的综合效应。蛋白质扩散常数与温度的关系是高度非阿伦尼乌斯的,在玻璃化转变时会出现从脆弱到强大的交叉。
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来源期刊
The Journal of Physical Chemistry Letters
The Journal of Physical Chemistry Letters CHEMISTRY, PHYSICAL-NANOSCIENCE & NANOTECHNOLOGY
CiteScore
9.60
自引率
7.00%
发文量
1519
审稿时长
1.6 months
期刊介绍: The Journal of Physical Chemistry (JPC) Letters is devoted to reporting new and original experimental and theoretical basic research of interest to physical chemists, biophysical chemists, chemical physicists, physicists, material scientists, and engineers. An important criterion for acceptance is that the paper reports a significant scientific advance and/or physical insight such that rapid publication is essential. Two issues of JPC Letters are published each month.
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