In enzymatic reactions, the reverse reaction reduces product noise

IF 2 4区 生物学 Q2 BIOLOGY Biosystems Pub Date : 2024-09-10 DOI:10.1016/j.biosystems.2024.105334
Ching-Chu Hsieh , Yung-Chun Lin , Wei-Bo Lin, Che-Chi Shu
{"title":"In enzymatic reactions, the reverse reaction reduces product noise","authors":"Ching-Chu Hsieh ,&nbsp;Yung-Chun Lin ,&nbsp;Wei-Bo Lin,&nbsp;Che-Chi Shu","doi":"10.1016/j.biosystems.2024.105334","DOIUrl":null,"url":null,"abstract":"<div><p>Enzymatic reactions are essential for most cellular reactions and ubiquitous in living organisms. In the present study, we explore the pivotal role of the reverse reaction in enzymatic reactions. It is a powerful noise-buffering motif. By SSA (stochastic simulation algorithm), a remarkable 32% reduction of product CV (coefficient of variation) was observed. To better understand the causes, we split the upstream noise. The product CV reduction is more than 35% for the noise inherited from the enzyme but merely 6%–21% for that from the substrate. It implies that the system applies different strategies to different upstream noises. We identified two leading causes responsible for noise attenuation. A cell is well designed to control its intracellular noise, and to acquire wisdom from nature is always enjoyable.</p></div>","PeriodicalId":50730,"journal":{"name":"Biosystems","volume":"246 ","pages":"Article 105334"},"PeriodicalIF":2.0000,"publicationDate":"2024-09-10","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":null,"platform":"Semanticscholar","paperid":null,"PeriodicalName":"Biosystems","FirstCategoryId":"99","ListUrlMain":"https://www.sciencedirect.com/science/article/pii/S0303264724002193","RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q2","JCRName":"BIOLOGY","Score":null,"Total":0}
引用次数: 0

Abstract

Enzymatic reactions are essential for most cellular reactions and ubiquitous in living organisms. In the present study, we explore the pivotal role of the reverse reaction in enzymatic reactions. It is a powerful noise-buffering motif. By SSA (stochastic simulation algorithm), a remarkable 32% reduction of product CV (coefficient of variation) was observed. To better understand the causes, we split the upstream noise. The product CV reduction is more than 35% for the noise inherited from the enzyme but merely 6%–21% for that from the substrate. It implies that the system applies different strategies to different upstream noises. We identified two leading causes responsible for noise attenuation. A cell is well designed to control its intracellular noise, and to acquire wisdom from nature is always enjoyable.

查看原文
分享 分享
微信好友 朋友圈 QQ好友 复制链接
本刊更多论文
在酶促反应中,逆反应会降低产物噪音
酶促反应是大多数细胞反应所必需的,在生物体内无处不在。在本研究中,我们探讨了逆反应在酶促反应中的关键作用。它是一种强大的噪声缓冲机制。通过 SSA(随机模拟算法),我们观察到产物 CV(变异系数)显著降低了 32%。为了更好地了解原因,我们对上游噪音进行了拆分。来自酶的噪声降低了 35% 以上,而来自底物的噪声仅降低了 6%-21% 。这意味着系统对不同的上游噪音采用了不同的策略。我们确定了导致噪音衰减的两个主要原因。细胞可以很好地控制其胞内噪音,从大自然中获取智慧总是令人愉快的。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
求助全文
约1分钟内获得全文 去求助
来源期刊
Biosystems
Biosystems 生物-生物学
CiteScore
3.70
自引率
18.80%
发文量
129
审稿时长
34 days
期刊介绍: BioSystems encourages experimental, computational, and theoretical articles that link biology, evolutionary thinking, and the information processing sciences. The link areas form a circle that encompasses the fundamental nature of biological information processing, computational modeling of complex biological systems, evolutionary models of computation, the application of biological principles to the design of novel computing systems, and the use of biomolecular materials to synthesize artificial systems that capture essential principles of natural biological information processing.
期刊最新文献
"Assembly Theory" in Life Origin Models: A Critical Review. An irreversible thermodynamic model of pre-biological small circular molecular dissipative structures inside vacuoles on the Archean Ocean surface. The genetic code is not universal. The problem of evolutionary directionality 50 years following the works of Sergei Meyen. Cancer memory as a mechanism to establish malignancy.
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
现在去查看 取消
×
提示
确定
0
微信
客服QQ
Book学术公众号 扫码关注我们
反馈
×
意见反馈
请填写您的意见或建议
请填写您的手机或邮箱
已复制链接
已复制链接
快去分享给好友吧!
我知道了
×
扫码分享
扫码分享
Book学术官方微信
Book学术文献互助
Book学术文献互助群
群 号:481959085
Book学术
文献互助 智能选刊 最新文献 互助须知 联系我们:info@booksci.cn
Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。
Copyright © 2023 Book学术 All rights reserved.
ghs 京公网安备 11010802042870号 京ICP备2023020795号-1