{"title":"Flexible optimization of hierarchical graph layout by genetic algorithm with various conditions","authors":"Ayana Murakami, Takayuki Itoh","doi":"10.1007/s12650-024-01018-5","DOIUrl":null,"url":null,"abstract":"<p>Graph layouts visualize relationships among data entities, where nodes represent individual entities and edges represent their relationships. Hierarchical graph layouts efficiently provide an overview of large-scale graphs, where nodes form clusters (called metanodes in this paper) based on their properties. Here, it is challenging to determine layouts for large-scale graphs, particularly hierarchical ones. Although various graph layout drawing methods, such as force-directed layout, have been discussed so far, the quality of a layout heavily relies on the initial positions of nodes or metanodes. Furthermore, it is more challenging to obtain layouts where specific desired metanodes stand out. This paper presents a layout optimization method for hierarchical graphs using a genetic algorithm (GA). Our method allows for the consistent improvement of layouts compared to relying solely on an existing algorithm for generating hierarchical graph layouts. In our implementation, first, hierarchical graph layouts are generated by applying an existing algorithm multiple times. Then, they are evaluated by specific metrics for hierarchical graph layouts and optimized using GA. Consequently, optimal layouts for these metrics are obtained. The paper also presents particular examples of layouts optimized under different conditions using a co-authorship graph dataset.</p><h3 data-test=\"abstract-sub-heading\">Graphical abstract</h3>","PeriodicalId":54756,"journal":{"name":"Journal of Visualization","volume":"108 1","pages":""},"PeriodicalIF":1.7000,"publicationDate":"2024-08-14","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":null,"platform":"Semanticscholar","paperid":null,"PeriodicalName":"Journal of Visualization","FirstCategoryId":"94","ListUrlMain":"https://doi.org/10.1007/s12650-024-01018-5","RegionNum":4,"RegionCategory":"计算机科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q3","JCRName":"COMPUTER SCIENCE, INTERDISCIPLINARY APPLICATIONS","Score":null,"Total":0}
引用次数: 0
Abstract
Graph layouts visualize relationships among data entities, where nodes represent individual entities and edges represent their relationships. Hierarchical graph layouts efficiently provide an overview of large-scale graphs, where nodes form clusters (called metanodes in this paper) based on their properties. Here, it is challenging to determine layouts for large-scale graphs, particularly hierarchical ones. Although various graph layout drawing methods, such as force-directed layout, have been discussed so far, the quality of a layout heavily relies on the initial positions of nodes or metanodes. Furthermore, it is more challenging to obtain layouts where specific desired metanodes stand out. This paper presents a layout optimization method for hierarchical graphs using a genetic algorithm (GA). Our method allows for the consistent improvement of layouts compared to relying solely on an existing algorithm for generating hierarchical graph layouts. In our implementation, first, hierarchical graph layouts are generated by applying an existing algorithm multiple times. Then, they are evaluated by specific metrics for hierarchical graph layouts and optimized using GA. Consequently, optimal layouts for these metrics are obtained. The paper also presents particular examples of layouts optimized under different conditions using a co-authorship graph dataset.
图形布局可视化数据实体之间的关系,其中节点代表单个实体,边代表它们之间的关系。分层图布局能有效提供大规模图的概览,其中节点根据其属性形成群集(本文中称为元节点)。在这里,确定大规模图,尤其是层次图的布局具有挑战性。虽然迄今为止已经讨论了各种图布局绘制方法,如力导向布局,但布局的质量在很大程度上取决于节点或元节点的初始位置。此外,要获得所需元节点特别突出的布局更具挑战性。本文介绍了一种使用遗传算法(GA)的分层图布局优化方法。与仅依赖现有算法生成层次图布局相比,我们的方法可以持续改进布局。在我们的实施过程中,首先通过多次应用现有算法生成分层图布局。然后,根据分层图布局的特定指标对其进行评估,并使用 GA 对其进行优化。因此,可以获得这些指标的最佳布局。本文还介绍了使用共同作者图数据集在不同条件下优化布局的具体实例。
Journal of VisualizationCOMPUTER SCIENCE, INTERDISCIPLINARY APPLICATIONS-IMAGING SCIENCE & PHOTOGRAPHIC TECHNOLOGY
CiteScore
3.40
自引率
5.90%
发文量
79
审稿时长
>12 weeks
期刊介绍:
Visualization is an interdisciplinary imaging science devoted to making the invisible visible through the techniques of experimental visualization and computer-aided visualization.
The scope of the Journal is to provide a place to exchange information on the latest visualization technology and its application by the presentation of latest papers of both researchers and technicians.