{"title":"De Novo Transcriptome Assembly and Characterization for Bergenia crassifolia (L.)","authors":"Shiping Cheng, Guomiao Zhao","doi":"10.1007/s11105-024-01483-0","DOIUrl":null,"url":null,"abstract":"<p><i>Bergenia crassifolia</i> (L.) Fritsch, of the family Bergenia Moench, has a broad distribution in China and has been used in Chinese medicine and Chinese gardens extensively. Approximately 544 million high-quality sequence reads and 75,115 unigenes were obtained, among which 40,102 (53.39%) were annotated in NR, 27,769 (36.97%) were annotated in Swiss-Prot, 27,266 (36.30%) were annotated in GO, 12,644 (16.83%) were annotated in KEGG, and 37,808 (50.33%) were annotated in eggNOG database. A total of 1,495 DEUs were obtained, and the expression patterns of these DEUs were gathered into eight categories, and the functions of genes in each categories were analyzed in KEGG pathway. The results may meet the needs for carbon–nitrogen metabolism, adaptation to climate change, and accumulation of secondary metabolites’ studies in <i>B</i>. <i>crassifolia</i> and its relatives.</p>","PeriodicalId":20215,"journal":{"name":"Plant Molecular Biology Reporter","volume":"7 1","pages":""},"PeriodicalIF":1.6000,"publicationDate":"2024-08-16","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":null,"platform":"Semanticscholar","paperid":null,"PeriodicalName":"Plant Molecular Biology Reporter","FirstCategoryId":"99","ListUrlMain":"https://doi.org/10.1007/s11105-024-01483-0","RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q4","JCRName":"BIOCHEMICAL RESEARCH METHODS","Score":null,"Total":0}
引用次数: 0
Abstract
Bergenia crassifolia (L.) Fritsch, of the family Bergenia Moench, has a broad distribution in China and has been used in Chinese medicine and Chinese gardens extensively. Approximately 544 million high-quality sequence reads and 75,115 unigenes were obtained, among which 40,102 (53.39%) were annotated in NR, 27,769 (36.97%) were annotated in Swiss-Prot, 27,266 (36.30%) were annotated in GO, 12,644 (16.83%) were annotated in KEGG, and 37,808 (50.33%) were annotated in eggNOG database. A total of 1,495 DEUs were obtained, and the expression patterns of these DEUs were gathered into eight categories, and the functions of genes in each categories were analyzed in KEGG pathway. The results may meet the needs for carbon–nitrogen metabolism, adaptation to climate change, and accumulation of secondary metabolites’ studies in B. crassifolia and its relatives.
期刊介绍：
The scope of the journal of Plant Molecular Biology Reporter has expanded to keep pace with new developments in molecular biology and the broad area of genomics. The journal now solicits papers covering myriad breakthrough technologies and discoveries in molecular biology, genomics, proteomics, metabolomics, and other ‘omics’, as well as bioinformatics.
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