Energy metabolism-related GLUD1 contributes to favorable clinical outcomes of IDH-mutant glioma

IF 2.2 3区 医学 Q3 CLINICAL NEUROLOGY BMC Neurology Pub Date : 2024-09-13 DOI:10.1186/s12883-024-03787-w
Renzhi Deng, Jianying Qin, Lei Wang, Haibin Li, Ning Wen, Ke Qin, Jianhui Dong, Jihua Wu, Dandan Zhu, Xuyong Sun
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Abstract

Glioma is the most common brain tumor. IDH mutations occur frequently in glioma, indicating a more favorable prognosis. We aimed to explore energy metabolism-related genes in glioma to promote the research and treatment. Datasets were obtained from TCGA and GEO databases. Candidate genes were screened by differential gene expression analysis, then functional enrichment analysis was conducted on the candidate genes. PPI was also carried out to help determine the target gene. GSEA and DO analysis were conducted in the different expression level groups of the target gene. Survival analysis and immune cell infiltrating analysis were performed as well. We screened 34 candidate genes and selected GLUD1 as the target gene. All candidate genes were significantly enriched in 10 KEGG pathways and 330 GO terms. GLUD1 expression was higher in IDH-mutant samples than IDH-wildtype samples, and higher in normal samples than tumor samples. Low GLUD1 expression was related to poor prognosis according to survival analysis. Most types of immune cells were negatively related to GLUD1 expression, but monocytes and activated mast cells exhibited significantly positive correlation with GLUD1 expression. GLUD1 expression was significantly related to 119 drugs and 6 immune checkpoint genes. GLUD1 was able to serve as an independent prognostic indicator of IDH-mutant glioma. In this study, we identified an energy metabolism-related gene GLUD1 potentially contributing to favorable clinical outcomes of IDH-mutant glioma. In glioma, GLUD1 related clinical outcomes and immune landscape were clearer, and more valuable information was provided for immunotherapy.
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与能量代谢相关的GLUD1有助于改善IDH突变型胶质瘤的临床预后
胶质瘤是最常见的脑肿瘤。IDH突变在胶质瘤中频繁出现,预示着胶质瘤的预后较好。我们旨在探索胶质瘤中的能量代谢相关基因,以促进研究和治疗。数据集来自 TCGA 和 GEO 数据库。通过差异基因表达分析筛选候选基因,然后对候选基因进行功能富集分析。还进行了 PPI 分析,以帮助确定靶基因。对目标基因的不同表达水平组进行了GSEA和DO分析。同时还进行了生存分析和免疫细胞浸润分析。我们筛选了 34 个候选基因,并选择 GLUD1 作为靶基因。所有候选基因都在 10 个 KEGG 通路和 330 个 GO 术语中明显富集。GLUD1在IDH突变样本中的表达高于IDH野生型样本,在正常样本中的表达高于肿瘤样本。根据生存分析,GLUD1的低表达与预后不良有关。大多数类型的免疫细胞与GLUD1表达呈负相关,但单核细胞和活化肥大细胞与GLUD1表达呈显著正相关。GLUD1的表达与119种药物和6个免疫检查点基因明显相关。GLUD1可作为IDH突变胶质瘤的独立预后指标。在这项研究中,我们发现了一个与能量代谢相关的基因GLUD1,它可能有助于IDH突变型胶质瘤的良好临床预后。在胶质瘤中,与GLUD1相关的临床预后和免疫格局更加清晰,为免疫疗法提供了更多有价值的信息。
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来源期刊
BMC Neurology
BMC Neurology 医学-临床神经学
CiteScore
4.20
自引率
0.00%
发文量
428
审稿时长
3-8 weeks
期刊介绍: BMC Neurology is an open access, peer-reviewed journal that considers articles on all aspects of the prevention, diagnosis and management of neurological disorders, as well as related molecular genetics, pathophysiology, and epidemiology.
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