Waqar Hussain Shah, Abdullah Baloch, Rider Jaimes-Reátegui, Sohail Iqbal, Syeda Rafia Fatima, Alexander N. Pisarchik
{"title":"Acute lymphoblastic leukemia classification using persistent homology","authors":"Waqar Hussain Shah, Abdullah Baloch, Rider Jaimes-Reátegui, Sohail Iqbal, Syeda Rafia Fatima, Alexander N. Pisarchik","doi":"10.1140/epjs/s11734-024-01301-4","DOIUrl":null,"url":null,"abstract":"<p>Acute Lymphoblastic Leukemia (ALL) is a prevalent form of childhood blood cancer characterized by the proliferation of immature white blood cells that rapidly replace normal cells in the bone marrow. The exponential growth of these leukemic cells can be fatal if not treated promptly. Classifying lymphoblasts and healthy cells poses a significant challenge, even for domain experts, due to their morphological similarities. Automated computer analysis of ALL can provide substantial support in this domain and potentially save numerous lives. In this paper, we propose a novel classification approach that involves analyzing shapes and extracting topological features of ALL cells. We employ persistent homology to capture these topological features. Our technique accurately and efficiently detects and classifies leukemia blast cells, achieving a recall of 98.2% and an <i>F1</i>-score of 94.6%. This approach has the potential to significantly enhance leukemia diagnosis and therapy.</p>","PeriodicalId":501403,"journal":{"name":"The European Physical Journal Special Topics","volume":"13 1","pages":""},"PeriodicalIF":0.0000,"publicationDate":"2024-09-06","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":null,"platform":"Semanticscholar","paperid":null,"PeriodicalName":"The European Physical Journal Special Topics","FirstCategoryId":"1085","ListUrlMain":"https://doi.org/10.1140/epjs/s11734-024-01301-4","RegionNum":0,"RegionCategory":null,"ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"","JCRName":"","Score":null,"Total":0}
引用次数: 0
Abstract
Acute Lymphoblastic Leukemia (ALL) is a prevalent form of childhood blood cancer characterized by the proliferation of immature white blood cells that rapidly replace normal cells in the bone marrow. The exponential growth of these leukemic cells can be fatal if not treated promptly. Classifying lymphoblasts and healthy cells poses a significant challenge, even for domain experts, due to their morphological similarities. Automated computer analysis of ALL can provide substantial support in this domain and potentially save numerous lives. In this paper, we propose a novel classification approach that involves analyzing shapes and extracting topological features of ALL cells. We employ persistent homology to capture these topological features. Our technique accurately and efficiently detects and classifies leukemia blast cells, achieving a recall of 98.2% and an F1-score of 94.6%. This approach has the potential to significantly enhance leukemia diagnosis and therapy.
急性淋巴细胞白血病(ALL)是一种常见的儿童血癌,其特点是未成熟白细胞增殖,迅速取代骨髓中的正常细胞。如果不及时治疗,这些白血病细胞的指数式增长可能会致命。由于淋巴母细胞和健康细胞形态相似,即使是领域专家也很难对它们进行分类。对 ALL 进行自动计算机分析可为这一领域提供大量支持,并有可能挽救无数生命。在本文中,我们提出了一种新颖的分类方法,包括分析 ALL 细胞的形状并提取拓扑特征。我们采用持久同源性来捕捉这些拓扑特征。我们的技术能准确、高效地检测白血病爆炸细胞并对其进行分类,召回率达到 98.2%,F1 分数达到 94.6%。这种方法有望大大提高白血病的诊断和治疗水平。