The role of linkers and frustrated lewis pairs catalysts in the formation of zwitterionic 1,2-anti-addition product with non-conjugated terminal diacetylenes: A computational study

IF 2.7 4区 生物学 Q2 BIOCHEMICAL RESEARCH METHODS Journal of molecular graphics & modelling Pub Date : 2024-09-14 DOI:10.1016/j.jmgm.2024.108866
Tulsi R. Patel , Bishwajit Ganguly
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Abstract

This study presents a computational investigation into the mechanistic pathway and the linker units involved in forming the zwitterionic 1,2-anti-addition product of non-conjugated diacetylenes, di(propargyl)ether (DPE), di(prop-2yn-1yl)sulfane (DPS) and 1,6-Heptadiyne (HD) catalyzed by the inter-molecular phosphine/borane frustrated Lewis pairs (FLPs), i.e., PPh2[C6H3(CF3)2](P-CF)/[B(C6F5)3]([B]) and P(o-tolyl)3(P-tol)/[B(C6F5)3]([B]). The potential energy surface (PES) calculations reveal that the anti-addition of P-CF to the internal C-atoms of acetylene units is energetically more favored than that of the addition of P-tol in DPE, DPS, and HD by ∼10.0, ∼9.2, and ∼6.0 kcal/mol, respectively. The calculations performed with DPE contain “—O—,” linker unit exhibits superior reactivity than DPS and HD, which suggests the electronegativity of linkers plays a significant role and facilitates the addition of Lewis bases. The higher electronegativity of linker units enables the 1,2-addition reaction by lowering the free energy activation barriers, as observed in the DFT calculations. The Molecular Electrostatic Potential (MESP) study shows that the electrostatic interactions favor the addition of P-CF to the active acetylene positions (C5/C4/C4) of [B]-DPE/DPS/HD-π complexes than the P-tol. The Distortion/Interaction (D/I) analysis reveals that transition states involving P-CF (TS1, TS3, and TS5) exhibit more interaction energy (ΔEInt) and less distortion energies (ΔEd) than that of the P-tol (TS2, TS4, and TS6). Further, the Energy Decomposition Analysis (EDA) also rationalizes the preferential approach of the electron-deficient Lewis base over the electron-rich one on the basis of the significant contribution of orbital interaction energies (ΔEorbital) in the cases of P-CF; TS1, TS3, and TS5. This study suggests that the electronic effects of substrates and the FLPs are crucial to facilitate the desired products formed with non-conjugated terminal alkynes.

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连接体和受挫路易斯对催化剂在与非共轭末端二乙炔形成齐聚物 1,2-反加成产物中的作用:计算研究
本研究介绍了在分子间膦/硼烷受挫路易斯对(FLPs)(即:PPh2[C6H3(CF3)2](P-CF)/[B(C6F5)3]([B])和 P(邻甲苯)3(P-tol)/[B])催化下,非共轭二乙炔、二(丙炔基)醚 (DPE)、二(丙-2炔-1 基)硫烷 (DPS) 和 1,6-庚二炔 (HD) 形成齐聚物 1,2-反加成产物所涉及的机理途径和连接单元的计算研究、PPh2[C6H3(CF3)2](P-CF)/[B(C6F5)3]([B]) and P(o-tolyl)3(P-tol)/[B(C6F5)3]([B]).势能面(PES)计算显示,在 DPE、DPS 和 HD 中,P-CF 向乙炔单元内部 C 原子的反添加比 P-tol 的添加在能量上分别有利 10.0、9.2 和 6.0 千卡/摩尔。与 DPS 和 HD 相比,用含有"-O-"连接体单元的 DPE 进行的计算显示出更高的反应活性,这表明连接体的电负性起着重要作用,有利于路易斯碱的添加。正如 DFT 计算所观察到的那样,连接体单元较高的电负性降低了自由能活化障碍,从而促进了 1,2 加成反应。分子静电位(MESP)研究表明,与 P-tol 相比,静电相互作用更有利于 P-CF 加到 [B]-DPE/DPS/HD-π 复合物的活性炔位置(C5/C4/C4)。畸变/相互作用(D/I)分析表明,与 P-tol(TS2、TS4 和 TS6)相比,涉及 P-CF(TS1、TS3 和 TS5)的过渡态表现出更高的相互作用能(ΔEInt)和更低的畸变能(ΔEd)。此外,在 P-CF、TS1、TS3 和 TS5 的情况下,基于轨道相互作用能(ΔEorbital)的显著贡献,能量分解分析(EDA)也合理地解释了缺电子路易斯碱优于富电子路易斯碱的情况。这项研究表明,底物和 FLP 的电子效应对于促进非共轭端炔形成所需的产物至关重要。
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来源期刊
Journal of molecular graphics & modelling
Journal of molecular graphics & modelling 生物-计算机:跨学科应用
CiteScore
5.50
自引率
6.90%
发文量
216
审稿时长
35 days
期刊介绍: The Journal of Molecular Graphics and Modelling is devoted to the publication of papers on the uses of computers in theoretical investigations of molecular structure, function, interaction, and design. The scope of the journal includes all aspects of molecular modeling and computational chemistry, including, for instance, the study of molecular shape and properties, molecular simulations, protein and polymer engineering, drug design, materials design, structure-activity and structure-property relationships, database mining, and compound library design. As a primary research journal, JMGM seeks to bring new knowledge to the attention of our readers. As such, submissions to the journal need to not only report results, but must draw conclusions and explore implications of the work presented. Authors are strongly encouraged to bear this in mind when preparing manuscripts. Routine applications of standard modelling approaches, providing only very limited new scientific insight, will not meet our criteria for publication. Reproducibility of reported calculations is an important issue. Wherever possible, we urge authors to enhance their papers with Supplementary Data, for example, in QSAR studies machine-readable versions of molecular datasets or in the development of new force-field parameters versions of the topology and force field parameter files. Routine applications of existing methods that do not lead to genuinely new insight will not be considered.
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