Yanqing Kang, Di Zhu, Haiyang Zhang, Enze Shi, Sigang Yu, Jinru Wu, Xuhui Wang, Xuan Liu, Geng Chen, Xi Jiang, Tuo Zhang, Shu Zhang
{"title":"Identifying Influential nodes in Brain Networks via Self-Supervised Graph-Transformer","authors":"Yanqing Kang, Di Zhu, Haiyang Zhang, Enze Shi, Sigang Yu, Jinru Wu, Xuhui Wang, Xuan Liu, Geng Chen, Xi Jiang, Tuo Zhang, Shu Zhang","doi":"arxiv-2409.11174","DOIUrl":null,"url":null,"abstract":"Studying influential nodes (I-nodes) in brain networks is of great\nsignificance in the field of brain imaging. Most existing studies consider\nbrain connectivity hubs as I-nodes. However, this approach relies heavily on\nprior knowledge from graph theory, which may overlook the intrinsic\ncharacteristics of the brain network, especially when its architecture is not\nfully understood. In contrast, self-supervised deep learning can learn\nmeaningful representations directly from the data. This approach enables the\nexploration of I-nodes for brain networks, which is also lacking in current\nstudies. This paper proposes a Self-Supervised Graph Reconstruction framework\nbased on Graph-Transformer (SSGR-GT) to identify I-nodes, which has three main\ncharacteristics. First, as a self-supervised model, SSGR-GT extracts the\nimportance of brain nodes to the reconstruction. Second, SSGR-GT uses\nGraph-Transformer, which is well-suited for extracting features from brain\ngraphs, combining both local and global characteristics. Third, multimodal\nanalysis of I-nodes uses graph-based fusion technology, combining functional\nand structural brain information. The I-nodes we obtained are distributed in\ncritical areas such as the superior frontal lobe, lateral parietal lobe, and\nlateral occipital lobe, with a total of 56 identified across different\nexperiments. These I-nodes are involved in more brain networks than other\nregions, have longer fiber connections, and occupy more central positions in\nstructural connectivity. They also exhibit strong connectivity and high node\nefficiency in both functional and structural networks. Furthermore, there is a\nsignificant overlap between the I-nodes and both the structural and functional\nrich-club. These findings enhance our understanding of the I-nodes within the\nbrain network, and provide new insights for future research in further\nunderstanding the brain working mechanisms.","PeriodicalId":501517,"journal":{"name":"arXiv - QuanBio - Neurons and Cognition","volume":"24 1","pages":""},"PeriodicalIF":0.0000,"publicationDate":"2024-09-17","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":null,"platform":"Semanticscholar","paperid":null,"PeriodicalName":"arXiv - QuanBio - Neurons and Cognition","FirstCategoryId":"1085","ListUrlMain":"https://doi.org/arxiv-2409.11174","RegionNum":0,"RegionCategory":null,"ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"","JCRName":"","Score":null,"Total":0}
引用次数: 0
Abstract
Studying influential nodes (I-nodes) in brain networks is of great
significance in the field of brain imaging. Most existing studies consider
brain connectivity hubs as I-nodes. However, this approach relies heavily on
prior knowledge from graph theory, which may overlook the intrinsic
characteristics of the brain network, especially when its architecture is not
fully understood. In contrast, self-supervised deep learning can learn
meaningful representations directly from the data. This approach enables the
exploration of I-nodes for brain networks, which is also lacking in current
studies. This paper proposes a Self-Supervised Graph Reconstruction framework
based on Graph-Transformer (SSGR-GT) to identify I-nodes, which has three main
characteristics. First, as a self-supervised model, SSGR-GT extracts the
importance of brain nodes to the reconstruction. Second, SSGR-GT uses
Graph-Transformer, which is well-suited for extracting features from brain
graphs, combining both local and global characteristics. Third, multimodal
analysis of I-nodes uses graph-based fusion technology, combining functional
and structural brain information. The I-nodes we obtained are distributed in
critical areas such as the superior frontal lobe, lateral parietal lobe, and
lateral occipital lobe, with a total of 56 identified across different
experiments. These I-nodes are involved in more brain networks than other
regions, have longer fiber connections, and occupy more central positions in
structural connectivity. They also exhibit strong connectivity and high node
efficiency in both functional and structural networks. Furthermore, there is a
significant overlap between the I-nodes and both the structural and functional
rich-club. These findings enhance our understanding of the I-nodes within the
brain network, and provide new insights for future research in further
understanding the brain working mechanisms.
研究大脑网络中的影响节点(I 节点)在大脑成像领域具有重要意义。现有研究大多将大脑连接枢纽视为 I 节点。然而,这种方法在很大程度上依赖于图论的先验知识,可能会忽略大脑网络的内在特征,尤其是在对其架构不甚了解的情况下。相比之下,自监督深度学习可以直接从数据中学习有意义的表征。这种方法可以探索大脑网络的 I 节点,这也是当前研究中所缺乏的。本文提出了一种基于图变换器(Graph-Transformer,SSGR-GT)的自监督图重构框架(Self-Supervised Graph Reconstruction frameworkbased on Graph-Transformer,SSGR-GT)来识别 I 节点,它有三个主要特点。首先,作为一个自监督模型,SSGR-GT 提取了大脑节点对重建的重要性。其次,SSGR-GT 使用了图变换器(Graph-Transformer),它非常适合从钎图中提取特征,同时结合了局部和全局特征。第三,I 节点的多模态分析使用了基于图的融合技术,将大脑功能和结构信息结合起来。我们获得的 I 节点分布在额叶上部、顶叶外侧和枕叶外侧等关键区域,在不同实验中共识别出 56 个。与其他区域相比,这些 I 节点参与了更多的大脑网络,具有更长的纤维连接,并占据了更多的中心位置,具有指示性连接。在功能网络和结构网络中,它们也表现出较强的连接性和较高的节点效率。此外,I 节点与结构网络和功能网络之间都有显著的重叠。这些发现加深了我们对脑网络中 I 节点的理解,为今后进一步了解大脑工作机制的研究提供了新的视角。