Bacterial killing and the dimensions of bacterial death

IF 7.8 1区 生物学 Q1 BIOTECHNOLOGY & APPLIED MICROBIOLOGY npj Biofilms and Microbiomes Pub Date : 2024-09-17 DOI:10.1038/s41522-024-00559-9
Renfei Wu, Cong Li, Jiuyi Li, Jelmer Sjollema, Gésinda I. Geertsema-Doornbusch, H. Willy de Haan-Visser, Emma S. C. Dijkstra, Yijin Ren, Zexin Zhang, Jian Liu, Hans C. Flemming, Henk J. Busscher, Henny C. van der Mei
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Abstract

Bacteria can be dead, alive, or exhibit slowed or suspended life forms, making bacterial death difficult to establish. Here, agar-plating, microscopic-counting, SYTO9/propidium-iodide staining, MTT-conversion, and bioluminescence-imaging were used to determine bacterial death upon exposure to different conditions. Rank correlations between pairs of assay outcomes were low, indicating different assays measure different aspects of bacterial death. Principal-component analysis yielded two principal components, named “reproductive-ability” (PC1) and “metabolic-activity” (PC2). Plotting of these principal components in two-dimensional space revealed a dead region, with borders defined by the PC1 and PC2 values. Sensu stricto implies an unpractical reality that all assays determining PC1 and PC2 must be carried out in order to establish bacterial death. Considering this unpracticality, it is suggested that at least one assay determining reproductive activity (PC1) and one assay determining metabolic activity (PC2) should be used to establish bacterial death. Minimally, researchers should specifically describe which dimension of bacterial death is assessed, when addressing bacterial death.

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细菌杀灭和细菌死亡的范围
细菌可以是死的、活的,也可以表现出缓慢或悬浮的生命形式,因此很难确定细菌的死亡。本文采用琼脂平板法、显微计数法、SYTO9/丙啶碘化物染色法、MTT 转化法和生物发光成像法来确定细菌在不同条件下的死亡情况。成对检测结果之间的等级相关性很低,这表明不同的检测方法测量细菌死亡的不同方面。主成分分析得出了两个主成分,分别为 "繁殖能力"(PC1)和 "代谢活性"(PC2)。将这些主成分绘制在二维空间中,可以发现一个死亡区域,其边界由 PC1 和 PC2 值定义。严格意义上讲,这意味着必须进行所有确定 PC1 和 PC2 的检测才能确定细菌死亡,这是一个不切实际的现实。考虑到这种不切实际的做法,建议至少使用一种确定繁殖活动(PC1)的检测方法和一种确定代谢活动(PC2)的检测方法来确定细菌死亡。最起码,研究人员在处理细菌死亡问题时,应具体说明评估细菌死亡的哪个维度。
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来源期刊
npj Biofilms and Microbiomes
npj Biofilms and Microbiomes Immunology and Microbiology-Microbiology
CiteScore
12.10
自引率
3.30%
发文量
91
审稿时长
9 weeks
期刊介绍: npj Biofilms and Microbiomes is a comprehensive platform that promotes research on biofilms and microbiomes across various scientific disciplines. The journal facilitates cross-disciplinary discussions to enhance our understanding of the biology, ecology, and communal functions of biofilms, populations, and communities. It also focuses on applications in the medical, environmental, and engineering domains. The scope of the journal encompasses all aspects of the field, ranging from cell-cell communication and single cell interactions to the microbiomes of humans, animals, plants, and natural and built environments. The journal also welcomes research on the virome, phageome, mycome, and fungome. It publishes both applied science and theoretical work. As an open access and interdisciplinary journal, its primary goal is to publish significant scientific advancements in microbial biofilms and microbiomes. The journal enables discussions that span multiple disciplines and contributes to our understanding of the social behavior of microbial biofilm populations and communities, and their impact on life, human health, and the environment.
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