Screening and identification of susceptibility genes for cervical cancer via bioinformatics analysis and the construction of an mitophagy-related genes diagnostic model

IF 2.7 3区 医学 Q3 ONCOLOGY Journal of Cancer Research and Clinical Oncology Pub Date : 2024-09-19 DOI:10.1007/s00432-024-05952-7
Zhang Zhang, Fangfang Chen, Xiaoxiao Deng
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Abstract

Purpose

This study aims to utilize bioinformatics methods to systematically screen and identify susceptibility genes for cervical cancer, as well as to construct and validate an mitophagy-related genes (MRGs) diagnostic model. The objective is to increase the understanding of the disease’s pathogenesis and improve early diagnosis and treatment.

Method

We initially collected a large amount of genomic data, including gene expression profile and single nucleotide polymorphism (SNP) data, from the control group and Cervical cancer (CC) patients. Through bioinformatics analysis, which employs methods such as differential gene expression analysis and pathway enrichment analysis, we identified a set of candidate susceptibility genes associated with cervical cancer.

Results

MRGs were extracted from single-cell RNA sequencing data, and a network graph was constructed on the basis of intercellular interaction data. Furthermore, using machine learning algorithms, we constructed a clinical prognostic model and validated and optimized it via extensive clinical data. Through bioinformatics analysis, we successfully identified a group of genes whose expression significantly differed during the development of CC and revealed the biological pathways in which these genes are involved. Moreover, our constructed clinical prognostic model demonstrated excellent performance in the validation phase, accurately predicting the clinical prognosis of patients.

Conclusion

This study delves into the susceptibility genes of cervical cancer through bioinformatics approaches and successfully builds a reliable clinical prognostic model. This study not only helps uncover potential pathogenic mechanisms of cervical cancer but also provides new directions for early diagnosis and treatment of the disease.

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通过生物信息学分析筛选和鉴定宫颈癌易感基因并构建有丝分裂相关基因诊断模型
目的 本研究旨在利用生物信息学方法系统地筛选和鉴定宫颈癌的易感基因,并构建和验证有丝分裂相关基因(MRGs)诊断模型。我们首先从对照组和宫颈癌(CC)患者中收集了大量基因组数据,包括基因表达谱和单核苷酸多态性(SNP)数据。结果从单细胞RNA测序数据中提取了RRGs,并根据细胞间相互作用数据构建了网络图。此外,我们利用机器学习算法构建了临床预后模型,并通过大量临床数据对其进行了验证和优化。通过生物信息学分析,我们成功鉴定了一组在CC发病过程中表达有显著差异的基因,并揭示了这些基因参与的生物学通路。此外,我们构建的临床预后模型在验证阶段表现出色,准确预测了患者的临床预后。 结论本研究通过生物信息学方法深入研究了宫颈癌的易感基因,并成功构建了可靠的临床预后模型。这项研究不仅有助于揭示宫颈癌的潜在致病机制,还为宫颈癌的早期诊断和治疗提供了新的方向。
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来源期刊
CiteScore
4.00
自引率
2.80%
发文量
577
审稿时长
2 months
期刊介绍: The "Journal of Cancer Research and Clinical Oncology" publishes significant and up-to-date articles within the fields of experimental and clinical oncology. The journal, which is chiefly devoted to Original papers, also includes Reviews as well as Editorials and Guest editorials on current, controversial topics. The section Letters to the editors provides a forum for a rapid exchange of comments and information concerning previously published papers and topics of current interest. Meeting reports provide current information on the latest results presented at important congresses. The following fields are covered: carcinogenesis - etiology, mechanisms; molecular biology; recent developments in tumor therapy; general diagnosis; laboratory diagnosis; diagnostic and experimental pathology; oncologic surgery; and epidemiology.
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