The next revolution in computational simulations: Harnessing AI and quantum computing in molecular dynamics

IF 6.1 2区 生物学 Q1 BIOCHEMISTRY & MOLECULAR BIOLOGY Current opinion in structural biology Pub Date : 2024-09-21 DOI:10.1016/j.sbi.2024.102919
Anna Lappala
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Abstract

The integration of artificial intelligence, machine learning and quantum computing into molecular dynamics simulations is catalyzing a revolution in computational biology, improving the accuracy and efficiency of simulations. This review describes the advancements and applications of these technologies to process vast molecular dynamics simulation datasets, adapt parameters of simulations and gain insight into complex biological processes. These advances include the use of predictive force fields, adaptive algorithms and quantum-assisted methodologies. While the integration of artificial intelligence and quantum computing with MD simulations provides insightful and stimulating improvements to our understanding of molecular mechanisms, it could introduce new issues related to data quality, interpretability of models and computational complexity. Modern multidisciplinary approaches are needed to navigate these challenges and exploit the potential of these emerging technologies for MD simulations of biomolecular systems.

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计算模拟的下一次革命:在分子动力学中利用人工智能和量子计算
将人工智能、机器学习和量子计算整合到分子动力学模拟中,正在催化计算生物学的一场革命,提高模拟的准确性和效率。本综述介绍了这些技术在处理庞大的分子动力学模拟数据集、调整模拟参数和深入了解复杂生物过程方面的进展和应用。这些进步包括使用预测力场、自适应算法和量子辅助方法。虽然人工智能和量子计算与 MD 模拟的整合为我们了解分子机理提供了富有洞察力和激励性的改进,但也可能带来与数据质量、模型可解释性和计算复杂性有关的新问题。需要采用现代多学科方法来应对这些挑战,并挖掘这些新兴技术在生物分子系统 MD 模拟方面的潜力。
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来源期刊
Current opinion in structural biology
Current opinion in structural biology 生物-生化与分子生物学
CiteScore
12.20
自引率
2.90%
发文量
179
审稿时长
6-12 weeks
期刊介绍: Current Opinion in Structural Biology (COSB) aims to stimulate scientifically grounded, interdisciplinary, multi-scale debate and exchange of ideas. It contains polished, concise and timely reviews and opinions, with particular emphasis on those articles published in the past two years. In addition to describing recent trends, the authors are encouraged to give their subjective opinion of the topics discussed. In COSB, we help the reader by providing in a systematic manner: 1. The views of experts on current advances in their field in a clear and readable form. 2. Evaluations of the most interesting papers, annotated by experts, from the great wealth of original publications. [...] The subject of Structural Biology is divided into twelve themed sections, each of which is reviewed once a year. Each issue contains two sections, and the amount of space devoted to each section is related to its importance. -Folding and Binding- Nucleic acids and their protein complexes- Macromolecular Machines- Theory and Simulation- Sequences and Topology- New constructs and expression of proteins- Membranes- Engineering and Design- Carbohydrate-protein interactions and glycosylation- Biophysical and molecular biological methods- Multi-protein assemblies in signalling- Catalysis and Regulation
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