Tangjun Xu , Wei Xu , Gaoji Zhang , Zeyang Liu , Hongyi Liu
{"title":"Characterization of the complete mitochondrial genomes of four tarantulas (Arachnida: Theraphosidae) with phylogenetic analysis","authors":"Tangjun Xu , Wei Xu , Gaoji Zhang , Zeyang Liu , Hongyi Liu","doi":"10.1016/j.gene.2024.148954","DOIUrl":null,"url":null,"abstract":"<div><div>To better understand the evolution of mitochondrial genomes (mitogenomes) within the family Theraphosidae, we characterized mitogenomes of four tarantulas (<em>Grammostola pulchripes</em>, <em>Phormictopus atrichomatus</em>, <em>Pterinochilus murinus</em> and <em>Pterinopelma sazimai</em>) for the first time. The mitogenomes were all classical circular structures, with lengths ranging from 13,822 bp to 14,011 bp. The constitutive genes and the orientation of the coding strand observed in the four mitogenomes were consistent with those found in other species belonging to the Theraphosidae family. The four mitogenomes were compacted and exhibited a preference for A and T, with the rRNA sequences showing a higher A+T content. Ka/Ks and p-distances analyses showed the <em>ND6</em> gene had highest evolutionary rate, while the <em>COⅠ</em> gene displayed relatively slower evolution. In contrast to previous phylogenetic studies, our phylogenetic analysis based on mitogenomes provides new phylogenetic relationships among subfamilies. Subfamily Theraphosinae is most closely related to Ornithoctoninae, slightly distant from Harpactirinae, and farthest from Selenocosmiinae. The new data we acquired regarding these mitogenomes will aid in understanding the complex interrelationships among species within the Theraphosidae family.</div></div>","PeriodicalId":2,"journal":{"name":"ACS Applied Bio Materials","volume":null,"pages":null},"PeriodicalIF":4.6000,"publicationDate":"2024-09-19","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":null,"platform":"Semanticscholar","paperid":null,"PeriodicalName":"ACS Applied Bio Materials","FirstCategoryId":"99","ListUrlMain":"https://www.sciencedirect.com/science/article/pii/S0378111924008357","RegionNum":0,"RegionCategory":null,"ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q2","JCRName":"MATERIALS SCIENCE, BIOMATERIALS","Score":null,"Total":0}
引用次数: 0
Abstract
To better understand the evolution of mitochondrial genomes (mitogenomes) within the family Theraphosidae, we characterized mitogenomes of four tarantulas (Grammostola pulchripes, Phormictopus atrichomatus, Pterinochilus murinus and Pterinopelma sazimai) for the first time. The mitogenomes were all classical circular structures, with lengths ranging from 13,822 bp to 14,011 bp. The constitutive genes and the orientation of the coding strand observed in the four mitogenomes were consistent with those found in other species belonging to the Theraphosidae family. The four mitogenomes were compacted and exhibited a preference for A and T, with the rRNA sequences showing a higher A+T content. Ka/Ks and p-distances analyses showed the ND6 gene had highest evolutionary rate, while the COⅠ gene displayed relatively slower evolution. In contrast to previous phylogenetic studies, our phylogenetic analysis based on mitogenomes provides new phylogenetic relationships among subfamilies. Subfamily Theraphosinae is most closely related to Ornithoctoninae, slightly distant from Harpactirinae, and farthest from Selenocosmiinae. The new data we acquired regarding these mitogenomes will aid in understanding the complex interrelationships among species within the Theraphosidae family.
为了更好地了解狼蛛科(Theraphosidae)线粒体基因组(有丝分裂基因组)的进化,我们首次鉴定了四种狼蛛(Grammostola pulchripes、Phormictopus atrichomatus、Pterinochilus murinus和Pterinopelma sazimai)的有丝分裂基因组。有丝分裂基因组均为经典的环状结构,长度从 13,822 bp 到 14,011 bp 不等。在这四个有丝分裂基因组中观察到的组成基因和编码链的方向与在其他蝶形花科物种中发现的一致。四个有丝分裂基因组结构紧凑,表现出对 A 和 T 的偏好,rRNA 序列中 A+T 含量较高。Ka/Ks和p-位差分析表明,ND6基因的进化速度最快,而COⅠ基因的进化速度相对较慢。与以往的系统进化研究不同,我们基于有丝分裂基因组的系统进化分析提供了亚科之间新的系统进化关系。Theraphosinae亚科与Ornithoctoninae的亲缘关系最密切,与Harpactirinae的亲缘关系稍远,与Selenocosmiinae的亲缘关系最远。我们获得的有关这些有丝分裂基因组的新数据将有助于理解Theraphosidae科内物种之间复杂的相互关系。