Rational analysis of hydrogen bonding interaction in phenazine, 2-hydroxynaphthalene (1:1) cocrystal: from molecular modeling to photophysical properties

IF 2.1 4区 化学 Q4 BIOCHEMISTRY & MOLECULAR BIOLOGY Journal of Molecular Modeling Pub Date : 2024-09-27 DOI:10.1007/s00894-024-06128-3
T. Sundareswaran, R. Jagan, N. Karthikeyan, B. Milton Boaz
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Abstract

Context

Organic cocrystals have a wide range of applications in the field of optics due to their photo responsive property. We present here a newly synthesized phenazine 2-hydroxynaphthalene (1:1) cocrystal, its structural and theoretical calculations which tend to the nonlinear optical property. In the crystal structure of the title cocrystal, the phenazine and 2-hydroxynaphthalene molecules from one- and two-dimensional supramolecular frameworks via O‒H…N hydrogen bonds and C‒H…N, C‒H…π interaction, respectively. The phenazine molecules from an infinite off-set stacking through π…π interaction in the three-dimensional molecular packing of the title cocrystal. The contribution of intermolecular interaction in the three-dimensional molecular packing and the interaction energy calculation is studied by the Hirshfeld surface analysis. The molecular geometry retrieved from the experimental X-ray diffraction analysis is in good agreement with the theoretically calculated parameters. Further, the molecular electrostatic potential (MEP) and frontier molecular orbital (FMO) analysis have been carried out to study the charge distribution and molecular reactive mechanism. Third-order nonlinear optical property of the cocrystals has been analyzed by Z-scan measurements. The determined nonlinear optical absorption coefficient value 6.442 × 10−05 (m/W) and the nonlinear refractive index value − 5.535 × 10−2 (m/W) suggest that the crystalline solid can be a good choice of potential nonlinear optical material.

Method

The crystal structures of phenazine 2-hydroxynaphthalene cocrystal was solved by direct methods procedure using SHELXS program and refined by full-matrix least square procedure on F2 using SHELXL-2018 program on Olex2 software. The computational calculation has been carried out using DFT/B3LYP quantum chemical function with triple zeta 6–311 +  + basis set in the ground state molecular stability using Gaussian 09W program suite. The Hirshfeld surface analysis mapping, associated 2D fingerprint plot, and intermolecular molecular interaction energy calculations were carried out using CrystalExplorer (version 21.5) software.

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酚嗪、2-羟基萘(1:1)共晶体中氢键相互作用的理性分析:从分子建模到光物理特性。
背景:有机共晶体具有光响应特性,因此在光学领域有着广泛的应用。我们在此介绍一种新合成的酚嗪-2-羟基萘(1:1)共晶体,其结构和理论计算都倾向于非线性光学特性。在该共晶体的晶体结构中,来自一维和二维超分子框架的酚嗪分子和 2-羟基萘分子分别通过 O-H...N 氢键和 C-H...N、C-H...π 相互作用。吩嗪分子通过π...π相互作用在标题共晶体的三维分子堆积中形成无限偏移堆积。通过 Hirshfeld 表面分析,研究了分子间相互作用在三维分子堆积中的贡献以及相互作用能的计算。通过 X 射线衍射实验分析得出的分子几何形状与理论计算参数非常吻合。此外,还进行了分子静电位(MEP)和前沿分子轨道(FMO)分析,以研究电荷分布和分子反应机制。通过 Z 扫描测量分析了共晶体的三阶非线性光学特性。测定的非线性光学吸收系数值为 6.442 × 10-05 (m/W),非线性折射率值为 - 5.535 × 10-2 (m/W),这表明该结晶固体是潜在非线性光学材料的良好选择:利用 SHELXS 程序通过直接法程序求解了酚嗪-2-羟基萘共晶的晶体结构,并利用 Olex2 软件上的 SHELXL-2018 程序在 F2 上通过全矩阵最小二乘法程序对晶体结构进行了细化。计算时使用了 DFT/B3LYP 量子化学函数,并在基态分子稳定性方面使用了高斯 09W 程序套件的三重泽塔 6-311 + + 基集。使用 CrystalExplorer(21.5 版)软件进行了 Hirshfeld 表面分析绘图、相关的二维指纹图谱和分子间相互作用能计算。
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来源期刊
Journal of Molecular Modeling
Journal of Molecular Modeling 化学-化学综合
CiteScore
3.50
自引率
4.50%
发文量
362
审稿时长
2.9 months
期刊介绍: The Journal of Molecular Modeling focuses on "hardcore" modeling, publishing high-quality research and reports. Founded in 1995 as a purely electronic journal, it has adapted its format to include a full-color print edition, and adjusted its aims and scope fit the fast-changing field of molecular modeling, with a particular focus on three-dimensional modeling. Today, the journal covers all aspects of molecular modeling including life science modeling; materials modeling; new methods; and computational chemistry. Topics include computer-aided molecular design; rational drug design, de novo ligand design, receptor modeling and docking; cheminformatics, data analysis, visualization and mining; computational medicinal chemistry; homology modeling; simulation of peptides, DNA and other biopolymers; quantitative structure-activity relationships (QSAR) and ADME-modeling; modeling of biological reaction mechanisms; and combined experimental and computational studies in which calculations play a major role.
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