Expediting adenovirus titer assays via an algorithmic live-cell imaging technique

IF 4.1 2区 生物学 Q2 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Journal of biotechnology Pub Date : 2024-09-26 DOI:10.1016/j.jbiotec.2024.09.018
Claire Velikonja , Landon Steenbakkers , Joshua How , Mackenzie Enns , Brandon Corbett , Chris McCready , Jake Nease , Prashant Mhaskar , David Latulippe
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Abstract

Interest in virus-based therapeutics for the treatment of genetic and oncolytic diseases has created a demand for high-yield, low-cost virus-manufacturing processes. However, traditional analytical methods of assessing infectious virus titer require multiple processing steps and manual counting, limiting sample throughput, and increasing human error. This bottleneck severely limits the development of new manufacturing unit operations to drive down costs. In this work, we utilize an Incucyte Live-Cell Analysis System to develop a high-throughput infectious titer assay for adenovirus expressing a GFP-transgene. Although previous studies have demonstrated live-cell imaging’s potential for use with other viruses, they provide little guidance regarding the selection of the viewing and analysis parameters. To fill this gap, we develop an algorithmic approach to identify the optimum viewing and analysis parameters and create a statistical workflow for quantifying infectious adenovirus in a sample dilution series in a standard 24-well microplate. The developed assay is comparable to Hexon staining, the gold-standard for adenovirus infectious titer, with a Pearson correlation coefficient of 0.9. Finally, the developed algorithmic approach and statistical workflow were applied to create an assay for adenovirus titer using a 96-well microplate, allowing five times more samples to be quantified compared to the standard 24-well plate. While this assay uses a GFP-insert that precludes its use in a clinical environment, the key learnings surrounding the careful use of viewing and analysis parameters, and the statistical workflow are widely applicable to implementing life-cell imaging for dilution-series-based assays. Moreover, this method directly enables the fast and accurate evaluation of virus samples in a preclinical environment.
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通过算法活细胞成像技术加快腺病毒滴度检测。
人们对用于治疗遗传病和溶瘤病的病毒疗法产生了浓厚的兴趣,因此需要高产出、低成本的病毒制造工艺。然而,评估传染性病毒滴度的传统分析方法需要多个处理步骤和人工计数,从而限制了样本吞吐量,并增加了人为误差。这一瓶颈严重限制了为降低成本而开发新的制造单元操作。在这项工作中,我们利用 Incucyte 活细胞分析系统开发了一种表达 GFP 转基因腺病毒的高通量感染滴度检测方法。尽管之前的研究已经证明了活细胞成像技术在其他病毒上的应用潜力,但它们在观察和分析参数的选择方面几乎没有提供任何指导。为了填补这一空白,我们开发了一种算法方法来确定最佳观察和分析参数,并创建了一个统计工作流程,用于量化标准 24 孔微孔板中样品稀释系列中的传染性腺病毒。所开发的检测方法的皮尔逊相关系数为 0.9,与腺病毒感染滴度的黄金标准 Hexon 染色法相当。最后,所开发的算法方法和统计工作流程被应用于使用 96 孔微孔板检测腺病毒滴度,与标准的 24 孔板相比,可量化的样本数量增加了五倍。虽然这种检测方法使用的是 GFP-插入物,不能用于临床环境,但围绕谨慎使用观察和分析参数以及统计工作流程的主要经验可广泛应用于基于稀释系列检测的生命细胞成像。此外,这种方法还能在临床前环境中直接对病毒样本进行快速准确的评估。
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来源期刊
Journal of biotechnology
Journal of biotechnology 工程技术-生物工程与应用微生物
CiteScore
8.90
自引率
2.40%
发文量
190
审稿时长
45 days
期刊介绍: The Journal of Biotechnology has an open access mirror journal, the Journal of Biotechnology: X, sharing the same aims and scope, editorial team, submission system and rigorous peer review. The Journal provides a medium for the rapid publication of both full-length articles and short communications on novel and innovative aspects of biotechnology. The Journal will accept papers ranging from genetic or molecular biological positions to those covering biochemical, chemical or bioprocess engineering aspects as well as computer application of new software concepts, provided that in each case the material is directly relevant to biotechnological systems. Papers presenting information of a multidisciplinary nature that would not be suitable for publication in a journal devoted to a single discipline, are particularly welcome.
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