Nitrosation mechanisms, kinetics, and dynamics of the guanine and 9-methylguanine radical cations by nitric oxide-Radical-radical combination at different electron configurations.

IF 3.1 2区 化学 Q3 CHEMISTRY, PHYSICAL Journal of Chemical Physics Pub Date : 2024-09-28 DOI:10.1063/5.0230367
Jonathan Benny, Toru Saito, Jianbo Liu
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Abstract

As a precursor to various reactive nitrogen species formed in biological systems, nitric oxide (•NO) participates in numerous processes, including enhancing DNA radiosensitivity in ionizing radiation-based radiotherapy. Forming guanine radical cations is another common DNA lesion resulting from ionization and oxidation damage. As such, the interaction of •NO with guanine radical cations (G•+) may contribute to the radiosensitization of •NO. An intriguing aspect of this process is the participation of multiple spin configurations in the reaction, including open-shell singlet 1,OS[G•+(↑)⋯(↓)•NO], closed-shell singlet 1,CS[G(↑↓)⋯NO+], and triplet 3[G•+(↑)⋯(↑)•NO]. In this study, the reactions of •NO with both unsubstituted guanine radical cations (in the 9HG•+ conformation) and 9-methylguanine radical cations (9MG•+, a guanosine-mimicking model compound) were investigated in the absence and presence of monohydration of radical cations. Kinetic-energy dependent reaction product ions and cross sections were measured using an electrospray ionization guided-ion beam tandem mass spectrometer. The reaction mechanisms, kinetics, and dynamics were comprehended by interpreting the reaction potential energy surface using spin-projected density functional theory, coupled cluster theory, and multiconfiguration complete active space second-order perturbation theory, followed by RRKM kinetics modeling. The combined experimental and computational findings revealed closed-shell singlet 1,CS[7-NO-9MG]+ as the major, exothermic product and triplet 3[8-NO-9MG]+ as the minor, endothermic product. Singlet biradical products were not detected due to high reaction endothermicities, activation barriers, and inherent instability.

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一氧化氮-自由基-自由基组合在不同电子构型下对鸟嘌呤和 9-甲基鸟嘌呤自由基阳离子的亚硝化机制、动力学和动力学。
作为生物系统中形成的各种活性氮物种的前体,一氧化氮(-NO)参与了许多过程,包括在基于电离辐射的放射治疗中提高 DNA 的放射敏感性。形成鸟嘌呤自由基阳离子是电离和氧化损伤导致的另一种常见 DNA 病变。因此,-NO 与鸟嘌呤自由基阳离子(G-+)的相互作用可能有助于-NO 的辐射敏感性。这一过程的一个有趣方面是多种自旋构型参与了反应,包括开壳单质 1,OS[G-+(↑)⋯(↓)-NO]、闭壳单质 1,CS[G(↑↓)⋯NO+]和三重态 3[G-+(↑)⋯(↑)-NO]。本研究考察了 -NO 与未取代鸟嘌呤自由基阳离子(9HG-+ 构象)和 9-甲基鸟嘌呤自由基阳离子(9MG-+,一种鸟苷模拟模型化合物)在自由基阳离子不存在和存在时的反应。使用电喷雾离子束串联质谱仪测量了与动力学能量相关的反应产物离子和截面。利用自旋推算密度泛函理论、耦合簇理论和多构型完整活性空间二阶扰动理论解释了反应势能面,然后建立了 RRKM 动力学模型,从而理解了反应机理、动力学和动力学。实验和计算的综合结果表明,闭壳单胞 1,CS[7-NO-9MG]+ 是主要的放热产物,三胞 3[8-NO-9MG]+ 是次要的放热产物。由于高反应内热、活化障碍和固有的不稳定性,没有检测到单双环产物。
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来源期刊
Journal of Chemical Physics
Journal of Chemical Physics 物理-物理:原子、分子和化学物理
CiteScore
7.40
自引率
15.90%
发文量
1615
审稿时长
2 months
期刊介绍: The Journal of Chemical Physics publishes quantitative and rigorous science of long-lasting value in methods and applications of chemical physics. The Journal also publishes brief Communications of significant new findings, Perspectives on the latest advances in the field, and Special Topic issues. The Journal focuses on innovative research in experimental and theoretical areas of chemical physics, including spectroscopy, dynamics, kinetics, statistical mechanics, and quantum mechanics. In addition, topical areas such as polymers, soft matter, materials, surfaces/interfaces, and systems of biological relevance are of increasing importance. Topical coverage includes: Theoretical Methods and Algorithms Advanced Experimental Techniques Atoms, Molecules, and Clusters Liquids, Glasses, and Crystals Surfaces, Interfaces, and Materials Polymers and Soft Matter Biological Molecules and Networks.
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