Machine learning assisted crystallographic reconstruction from atom probe tomographic images.

IF 2.3 4区 物理与天体物理 Q3 PHYSICS, CONDENSED MATTER Journal of Physics: Condensed Matter Pub Date : 2024-10-30 DOI:10.1088/1361-648X/ad81a2
Jie-Ming Pu, Shuai Chen, Tong-Yi Zhang
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Abstract

Atom probe tomography (APT) is a powerful technique for three-dimensional (3D) atomic-scale imaging, enabling the accurate analysis on the compositional distribution at the nanoscale. How to accurately reconstruct crystallographic information from APT data, however, is still a great challenge due to the intrinsic nature of the APT technique. In this paper, we propose a novel approach that consists of the modified forward simulation process and the backward machine learning process to recover the tested crystal from APT data. The high-throughput forward simulations on Al single crystals of different orientations generate 10 000 original 3D images and data augmentation is implemented on the original images, resulting in 100 000 3D images. The big data allows the development of deep learning models and three deep learning algorithms of Convolutional Neural Network (CNN), Vision Transformer (ViT), and Variational Autoencoder (VAE) are used in the backward process. After training, the ViT model performs superior than the CNN and VAE models, which can recover the crystalline orientation outstandingly, as evaluated by the coefficient of determinationR2and the Mean Percent Error (MPE), viz.,R2= 0.93 and MPE = 0.43%,R2= 0.97 and MPE = 0.35%, andR2= 0.93 and MPE = 0.77% for the rotation anglesϕ,ψandθ, respectively, on the test dataset. The present work clearly demonstrates the capability of deep learning models in the recovery of the tested crystals from APT data, thereby paving the way for the further development of large artificial intelligent models of APT.

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机器学习辅助原子探针断层扫描图像的晶体学重建。
原子探针层析成像(APT)是一种功能强大的三维原子尺度成像技术,能够准确分析纳米尺度的成分分布。然而,由于 APT 技术的固有特性,如何从 APT 数据中准确地重建晶体学信息仍然是一个巨大的挑战。在本文中,我们提出了一种新方法,该方法由改进的前向模拟过程和后向机器学习过程组成,用于从 APT 数据中恢复被测晶体。通过对不同取向的 Al 单晶体进行高通量前向模拟,可生成 10,000 张原始三维图像,再对原始图像进行数据增强,可生成 100,000 张三维图像。大数据允许开发深度学习模型,在后向过程中使用了卷积神经网络(CNN)、视觉变换器(ViT)和变异自动编码器(VAE)三种深度学习算法。经过训练后,ViT 模型的性能优于 CNN 和 VAE 模型,可以出色地恢复晶体的取向,具体表现为在测试数据集上,旋转角度ϕ、ψ和θ的判定系数 R^2 和平均百分比误差(MPE),分别为 R^2=0.93 和 MPE=0.43%、R^2=0.97 和 MPE=0.35%,以及 R^2=0.93 和 MPE=0.77%。本研究清楚地证明了深度学习模型从 APT 数据中恢复测试晶体的能力,从而为进一步开发 APT 大型人工智能模型铺平了道路。
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来源期刊
Journal of Physics: Condensed Matter
Journal of Physics: Condensed Matter 物理-物理:凝聚态物理
CiteScore
5.30
自引率
7.40%
发文量
1288
审稿时长
2.1 months
期刊介绍: Journal of Physics: Condensed Matter covers the whole of condensed matter physics including soft condensed matter and nanostructures. Papers may report experimental, theoretical and simulation studies. Note that papers must contain fundamental condensed matter science: papers reporting methods of materials preparation or properties of materials without novel condensed matter content will not be accepted.
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