Development and validation of an explainable machine learning model for predicting multidimensional frailty in hospitalized patients with cirrhosis.

IF 6.8 2区 生物学 Q1 BIOCHEMICAL RESEARCH METHODS Briefings in bioinformatics Pub Date : 2024-09-23 DOI:10.1093/bib/bbae491
Fang Yang, Chaoqun Li, Wanting Yang, Yumei He, Liping Wu, Kui Jiang, Chao Sun
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Abstract

We sought to develop and validate a machine learning (ML) model for predicting multidimensional frailty based on clinical and laboratory data. Moreover, an explainable ML model utilizing SHapley Additive exPlanations (SHAP) was constructed. This study enrolled 622 patients hospitalized due to decompensating episodes at a tertiary hospital. The cohort data were randomly divided into training and test sets. External validation was carried out using 131 patients from other tertiary hospitals. The frail phenotype was defined according to a self-reported questionnaire (Frailty Index). The area under the receiver operating characteristics curve was adopted to compare the performance of five ML models. The importance of the features and interpretation of the ML models were determined using the SHAP method. The proportions of cirrhotic patients with nonfrail and frail phenotypes in combined training and test sets were 87.8% and 12.2%, respectively, while they were 88.5% and 11.5% in the external validation dataset. Five ML algorithms were used, and the random forest (RF) model exhibited substantially predictive performance. Regarding the external validation, the RF algorithm outperformed other ML models. Moreover, the SHAP method demonstrated that neutrophil-to-lymphocyte ratio, age, lymphocyte-to-monocyte ratio, ascites, and albumin served as the most important predictors for frailty. At the patient level, the SHAP force plot and decision plot exhibited a clinically meaningful explanation of the RF algorithm. We constructed an ML model (RF) providing accurate prediction of frail phenotype in decompensated cirrhosis. The explainability and generalizability may foster clinicians to understand contributors to this physiologically vulnerable situation and tailor interventions.

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开发并验证用于预测住院肝硬化患者多维虚弱程度的可解释机器学习模型。
我们试图开发并验证一种基于临床和实验室数据预测多维虚弱的机器学习(ML)模型。此外,我们还利用SHAPLEY Additive exPlanations(SHAP)构建了一个可解释的ML模型。这项研究在一家三甲医院收治了 622 名因失代偿发作而住院的患者。队列数据被随机分为训练集和测试集。使用其他三级医院的 131 名患者进行了外部验证。虚弱表型是根据自我报告问卷(虚弱指数)定义的。采用接收者操作特征曲线下面积来比较五个 ML 模型的性能。使用 SHAP 方法确定了特征的重要性和 ML 模型的解释。在联合训练集和测试集中,非虚弱和虚弱表型的肝硬化患者比例分别为87.8%和12.2%,而在外部验证数据集中,非虚弱和虚弱表型的肝硬化患者比例分别为88.5%和11.5%。共使用了五种多重L算法,其中随机森林(RF)模型的预测性能较高。在外部验证方面,RF 算法的表现优于其他 ML 模型。此外,SHAP 方法表明,中性粒细胞与淋巴细胞比率、年龄、淋巴细胞与单核细胞比率、腹水和白蛋白是预测虚弱的最重要因素。在患者层面,SHAP力图和决策图显示了 RF 算法具有临床意义的解释。我们构建的多项式模型(RF)能准确预测失代偿期肝硬化患者的虚弱表型。该模型的可解释性和可推广性可帮助临床医生了解造成这种生理脆弱情况的因素,并采取有针对性的干预措施。
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来源期刊
Briefings in bioinformatics
Briefings in bioinformatics 生物-生化研究方法
CiteScore
13.20
自引率
13.70%
发文量
549
审稿时长
6 months
期刊介绍: Briefings in Bioinformatics is an international journal serving as a platform for researchers and educators in the life sciences. It also appeals to mathematicians, statisticians, and computer scientists applying their expertise to biological challenges. The journal focuses on reviews tailored for users of databases and analytical tools in contemporary genetics, molecular and systems biology. It stands out by offering practical assistance and guidance to non-specialists in computerized methodologies. Covering a wide range from introductory concepts to specific protocols and analyses, the papers address bacterial, plant, fungal, animal, and human data. The journal's detailed subject areas include genetic studies of phenotypes and genotypes, mapping, DNA sequencing, expression profiling, gene expression studies, microarrays, alignment methods, protein profiles and HMMs, lipids, metabolic and signaling pathways, structure determination and function prediction, phylogenetic studies, and education and training.
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