Unimolecular isomerizations of C6H6•+ radical cations: a computational study

IF 2.1 4区 化学 Q4 BIOCHEMISTRY & MOLECULAR BIOLOGY Journal of Molecular Modeling Pub Date : 2024-10-04 DOI:10.1007/s00894-024-06148-z
Kiew S. Kharnaior, Asit K. Chandra, R. H. Duncan Lyngdoh
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Abstract

Concept

Eighteen concerted isomerization reactions of various C6H6•+ radical cation (RC) species are studied and found to proceed via well-defined transition states, whose relative positions along the reaction pathway generally agree with Hammond’s postulate. From the barrier heights, the rate coefficients of these reactions are estimated by using transition state theory, and the activation energies are computed. Through combination among themselves, these 18 isomerizations yielded 15 multi-step conversion routes of various C6H6•+ species to the lowest energy benzene radical cation isomer 1, which routes are compared.

Methods

Use is made of DFT with the B3LYP and M06-2X functionals, along with the CBS-QB3 approach to arrive at better energies. From the barrier heights for each of the concerted reactions, canonical transition state theory was applied to evaluate rate coefficients k over the temperature range 200–500 K. The Arrhenius activation energies were computed using the plot of ln k vs. 1/T.

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C6H6-+ 自由基阳离子的单分子异构化:计算研究。
概念:研究发现,各种 C6H6-+ 自由基阳离子 (RC) 物种的 18 个协同异构化反应都是通过定义明确的过渡态进行的,这些过渡态在反应路径上的相对位置与哈蒙德假设基本吻合。根据障碍高度,利用过渡态理论估算出了这些反应的速率系数,并计算出了活化能。通过相互组合,这 18 种异构化反应产生了从各种 C6H6-+ 物种到能量最低的苯自由基阳离子异构体 1 的 15 种多步转化路线,并对这些路线进行了比较:方法:利用 B3LYP 和 M06-2X 函数的 DFT 以及 CBS-QB3 方法得出了更好的能量。根据每个协同反应的势垒高度,应用典型过渡态理论评估了 200-500 K 温度范围内的速率系数 k。
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来源期刊
Journal of Molecular Modeling
Journal of Molecular Modeling 化学-化学综合
CiteScore
3.50
自引率
4.50%
发文量
362
审稿时长
2.9 months
期刊介绍: The Journal of Molecular Modeling focuses on "hardcore" modeling, publishing high-quality research and reports. Founded in 1995 as a purely electronic journal, it has adapted its format to include a full-color print edition, and adjusted its aims and scope fit the fast-changing field of molecular modeling, with a particular focus on three-dimensional modeling. Today, the journal covers all aspects of molecular modeling including life science modeling; materials modeling; new methods; and computational chemistry. Topics include computer-aided molecular design; rational drug design, de novo ligand design, receptor modeling and docking; cheminformatics, data analysis, visualization and mining; computational medicinal chemistry; homology modeling; simulation of peptides, DNA and other biopolymers; quantitative structure-activity relationships (QSAR) and ADME-modeling; modeling of biological reaction mechanisms; and combined experimental and computational studies in which calculations play a major role.
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