The cryptic immunopeptidome in health and disease.

IF 13.6 2区 生物学 Q1 GENETICS & HEREDITY Trends in Genetics Pub Date : 2024-10-09 DOI:10.1016/j.tig.2024.09.003
Eralda Kina, Jean-David Larouche, Pierre Thibault, Claude Perreault
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Abstract

Peptides presented by MHC proteins regulate all aspects of T cell biology. These MHC-associated peptides (MAPs) form what is known as the immunopeptidome and their comprehensive analysis has catalyzed the burgeoning field of immunopeptidomics. Advances in mass spectrometry (MS) and next-generation sequencing have facilitated significant breakthroughs in this area, some of which are highlighted in this article on the cryptic immunopeptidome. Here, 'cryptic' refers to peptides and proteins encoded by noncanonical open reading frames (ORFs). Cryptic MAPs derive mainly from short unstable proteins found in normal, infected, and neoplastic cells. Cryptic MAPs show minimal overlap with cryptic proteins found in whole-cell extracts. In many cancer types, most cancer-specific MAPs are cryptic.

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健康和疾病中的隐性免疫肽组。
由 MHC 蛋白呈现的肽调控着 T 细胞生物学的方方面面。这些 MHC 相关肽(MAPs)构成了所谓的免疫肽组,对它们的全面分析促进了免疫肽组学领域的蓬勃发展。质谱(MS)和新一代测序技术的进步促进了这一领域的重大突破,本文将重点介绍其中一些关于隐性免疫肽组的研究。这里的 "隐性 "是指由非规范开放阅读框(ORF)编码的肽和蛋白质。隐性 MAPs 主要来自正常细胞、感染细胞和肿瘤细胞中的不稳定短蛋白。隐性 MAP 与全细胞提取物中发现的隐性蛋白质重叠极少。在许多癌症类型中,大多数癌症特异性 MAPs 都是隐性的。
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来源期刊
Trends in Genetics
Trends in Genetics 生物-遗传学
CiteScore
20.90
自引率
0.90%
发文量
160
审稿时长
6-12 weeks
期刊介绍: Launched in 1985, Trends in Genetics swiftly established itself as a "must-read" for geneticists, offering concise, accessible articles covering a spectrum of topics from developmental biology to evolution. This reputation endures, making TiG a cherished resource in the genetic research community. While evolving with the field, the journal now embraces new areas like genomics, epigenetics, and computational genetics, alongside its continued coverage of traditional subjects such as transcriptional regulation, population genetics, and chromosome biology. Despite expanding its scope, the core objective of TiG remains steadfast: to furnish researchers and students with high-quality, innovative reviews, commentaries, and discussions, fostering an appreciation for advances in genetic research. Each issue of TiG presents lively and up-to-date Reviews and Opinions, alongside shorter articles like Science & Society and Spotlight pieces. Invited from leading researchers, Reviews objectively chronicle recent developments, Opinions provide a forum for debate and hypothesis, and shorter articles explore the intersection of genetics with science and policy, as well as emerging ideas in the field. All articles undergo rigorous peer-review.
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