eCOALIA: Neocortical neural mass model for simulating electroencephalographic signals

IF 2.4 4区 计算机科学 Q2 COMPUTER SCIENCE, SOFTWARE ENGINEERING SoftwareX Pub Date : 2024-10-14 DOI:10.1016/j.softx.2024.101924
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Abstract

This paper introduces eCOALIA, a Python-based environment for simulating intracranial local field potentials and scalp electroencephalography (EEG) signals with neural mass models. The source activity is modeled by a novel neural mass model respecting the layered structure of the neocortex. The whole-brain model is composed of coupled neural masses, each representing a brain region at the mesoscale and connected through the human connectome matrix. The forward solution on the electrode contracts is computed using biophysical modeling. eCOALIA allows parameter evolution during a simulation time course and visualizes the local field potential at the level of cortex and EEG electrodes. Advantaged with the neurophysiological modeling, eCOALIA advances the in silico modeling of physiological and pathological brain activity.
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eCOALIA:模拟脑电信号的新皮质神经块模型
本文介绍了 eCOALIA,这是一种基于 Python 的环境,可利用神经块模型模拟颅内局部场电位和头皮脑电图(EEG)信号。源活动由一个尊重新皮质分层结构的新型神经块模型建模。全脑模型由耦合神经块组成,每个神经块代表中尺度的一个脑区,并通过人类连接矩阵相连。eCOALIA 允许在模拟时间过程中进行参数演化,并可视化皮层和脑电图电极水平的局部场势。借助神经生理学建模,eCOALIA 推进了生理和病理大脑活动的硅建模。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
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来源期刊
SoftwareX
SoftwareX COMPUTER SCIENCE, SOFTWARE ENGINEERING-
CiteScore
5.50
自引率
2.90%
发文量
184
审稿时长
9 weeks
期刊介绍: SoftwareX aims to acknowledge the impact of software on today''s research practice, and on new scientific discoveries in almost all research domains. SoftwareX also aims to stress the importance of the software developers who are, in part, responsible for this impact. To this end, SoftwareX aims to support publication of research software in such a way that: The software is given a stamp of scientific relevance, and provided with a peer-reviewed recognition of scientific impact; The software developers are given the credits they deserve; The software is citable, allowing traditional metrics of scientific excellence to apply; The academic career paths of software developers are supported rather than hindered; The software is publicly available for inspection, validation, and re-use. Above all, SoftwareX aims to inform researchers about software applications, tools and libraries with a (proven) potential to impact the process of scientific discovery in various domains. The journal is multidisciplinary and accepts submissions from within and across subject domains such as those represented within the broad thematic areas below: Mathematical and Physical Sciences; Environmental Sciences; Medical and Biological Sciences; Humanities, Arts and Social Sciences. Originating from these broad thematic areas, the journal also welcomes submissions of software that works in cross cutting thematic areas, such as citizen science, cybersecurity, digital economy, energy, global resource stewardship, health and wellbeing, etcetera. SoftwareX specifically aims to accept submissions representing domain-independent software that may impact more than one research domain.
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