Quantum chemical treatment, electronic energy in various solvents, spectroscopic, molecular docking and dynamic simulation studies of 2-amino-N-(2-chloro-6-methylphenyl)thiazole-5-carboxamide: A core of anticancer drug

Nand Lal Verma , Shilendra Kumar , Mohit Kumar , Jai Pal , Deepa Sharma , Ram Sunil Kumar Lalji , Mohit Chahal , Hari Kant , Nisha Rathor , Saleem Javed , Gautam Jaiswar
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Abstract

The titled molecule 2-Amino-N-(2-chloro-6-methylphenyl)thiazole-5-carboxamide (ANMC) is a core of anticancer drug dasatinib (leukemia). Its derivatives exhibited bioactivity against breast cancer. Experimentally, the titled compound was described using NMR (1H NMR and 13C NMR), FTIR and UV–visible spectroscopy. The results were compared with the theoretical predictions, showing good agreement such as theoretical NH vibrations showed symmetric stretching and asymmetric stretching at 3429 and 3440 cm−1 respectively, λmax values appear at 305 nm for experimental and 307.75 nm for theoretical observations in acetone medium. Hirshfeld surface analysis well described the secondary internal and external interactions obtained like dnorm and di ranges −1.8551 to 1.4590 and 0.0918 to 2.6756 respectively. Comparing UV–visible spectra obtained in various solvents with the calculated TD-DFT results revealed minimal solvent effects. Molecular electrostatic potential (MEP) map and Fukui functions were employed, which indicated reactive sites of the molecule and the obtained order of nucleophilic reactivity was C16 > C2 > C8 > Cl1 > C22 > C21. The bioactivity profile probability of ANMC was theoretically explored by calculation of electrophilicity index and drug-likeness. Molecular docking of the ANMC molecule was performed with ten receptors to obtain the best ligand–protein interaction and the minimum binding energy obtained was −8.0 kcal/mol. Biomolecular stability of ANMC was investigated by Molecular Dynamic Simulation (MDS). And also the analysis of free energies showed strong interactions between the ligand and the protein.

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2-amino-N-(2-chloro-6-methylphenyl)thiazole-5-carboxamide: A core of anticancer drug 的量子化学处理、各种溶剂中的电子能量、光谱、分子对接和动态模拟研究
标题分子 2-氨基-N-(2-氯-6-甲基苯基)噻唑-5-甲酰胺(ANMC)是抗癌药物达沙替尼(白血病)的核心成分。其衍生物对乳腺癌具有生物活性。实验中,使用核磁共振(1H NMR 和 13C NMR)、傅立叶变换红外光谱和紫外可见光谱对标题化合物进行了描述。实验结果与理论预测结果进行了比较,结果表明两者吻合得很好,如理论 NH 振动分别在 3429 和 3440 cm-1 处出现对称伸展和不对称伸展,在丙酮介质中,实验观测的 λmax 值为 305 nm,理论观测的 λmax 值为 307.75 nm。Hirshfeld 表面分析很好地描述了次要的内部和外部相互作用,如 dnorm 和 di 的范围分别为 -1.8551 至 1.4590 和 0.0918 至 2.6756。将在各种溶剂中获得的紫外可见光谱与 TD-DFT 计算结果进行比较后发现,溶剂的影响微乎其微。分子静电位图和福井函数显示了分子的反应位点,得到的亲核反应性顺序为 C16 > C2 > C8 > Cl1 > C22 > C21。通过计算亲电指数和药物亲和性,从理论上探讨了 ANMC 的生物活性谱概率。ANMC 分子与十种受体进行了分子对接,以获得配体与蛋白质的最佳相互作用,得到的最小结合能为 -8.0 kcal/mol。分子动力学模拟(MDS)研究了 ANMC 的生物分子稳定性。此外,自由能分析表明配体与蛋白质之间存在很强的相互作用。
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来源期刊
CiteScore
8.40
自引率
11.40%
发文量
1364
审稿时长
40 days
期刊介绍: Spectrochimica Acta, Part A: Molecular and Biomolecular Spectroscopy (SAA) is an interdisciplinary journal which spans from basic to applied aspects of optical spectroscopy in chemistry, medicine, biology, and materials science. The journal publishes original scientific papers that feature high-quality spectroscopic data and analysis. From the broad range of optical spectroscopies, the emphasis is on electronic, vibrational or rotational spectra of molecules, rather than on spectroscopy based on magnetic moments. Criteria for publication in SAA are novelty, uniqueness, and outstanding quality. Routine applications of spectroscopic techniques and computational methods are not appropriate. Topics of particular interest of Spectrochimica Acta Part A include, but are not limited to: Spectroscopy and dynamics of bioanalytical, biomedical, environmental, and atmospheric sciences, Novel experimental techniques or instrumentation for molecular spectroscopy, Novel theoretical and computational methods, Novel applications in photochemistry and photobiology, Novel interpretational approaches as well as advances in data analysis based on electronic or vibrational spectroscopy.
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