Regularizing hyperparameters of interacting neural signals in the mouse cortex reflect states of arousal.

IF 3.8 2区 生物学 Q1 BIOCHEMICAL RESEARCH METHODS PLoS Computational Biology Pub Date : 2024-10-15 eCollection Date: 2024-10-01 DOI:10.1371/journal.pcbi.1012478
Dmitry R Lyamzin, Andrea Alamia, Mohammad Abdolrahmani, Ryo Aoki, Andrea Benucci
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Abstract

In natural behaviors, multiple neural signals simultaneously drive activation across overlapping brain networks. Due to limitations in the amount of data that can be acquired in common experimental designs, the determination of these interactions is commonly inferred via modeling approaches, which reduce overfitting by finding appropriate regularizing hyperparameters. However, it is unclear whether these hyperparameters can also be related to any aspect of the underlying biological phenomena and help interpret them. We applied a state-of-the-art regularization procedure-automatic locality determination-to interacting neural activations in the mouse posterior cortex associated with movements of the body and eyes. As expected, regularization significantly improved the determination and interpretability of the response interactions. However, regularizing hyperparameters also changed considerably, and seemingly unpredictably, from animal to animal. We found that these variations were not random; rather, they correlated with the variability in visually evoked responses and with the variability in the state of arousal of the animals measured by pupillometry-both pieces of information that were not included in the modeling framework. These observations could be generalized to another commonly used-but potentially less informative-regularization method, ridge regression. Our findings demonstrate that optimal model hyperparameters can be discovery tools that are informative of factors not a priori included in the model's design.

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小鼠大脑皮层中相互作用的神经信号的正则化超参数反映了唤醒状态。
在自然行为中,多个神经信号会同时驱动重叠的大脑网络激活。由于普通实验设计中获取的数据量有限,通常通过建模方法来推断这些交互作用,这种方法通过找到适当的正则化超参数来减少过拟合。然而,目前还不清楚这些超参数是否也能与潜在生物现象的任何方面相关并有助于解释这些现象。我们将最先进的正则化程序--自动定位确定--应用于小鼠后皮层中与身体和眼睛运动相关的交互神经激活。不出所料,正则化大大提高了反应互动的确定性和可解释性。然而,正则化超参数也发生了很大变化,而且似乎无法预测,因动物而异。我们发现这些变化并不是随机的;相反,它们与视觉诱发反应的变化以及瞳孔测量法测得的动物唤醒状态的变化相关--这两种信息都没有包含在建模框架中。这些观察结果可以推广到另一种常用但信息量可能较少的正则化方法--脊回归。我们的研究结果表明,最佳模型超参数可以作为发现工具,为模型设计中未预先包含的因素提供信息。
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来源期刊
PLoS Computational Biology
PLoS Computational Biology BIOCHEMICAL RESEARCH METHODS-MATHEMATICAL & COMPUTATIONAL BIOLOGY
CiteScore
7.10
自引率
4.70%
发文量
820
审稿时长
2.5 months
期刊介绍: PLOS Computational Biology features works of exceptional significance that further our understanding of living systems at all scales—from molecules and cells, to patient populations and ecosystems—through the application of computational methods. Readers include life and computational scientists, who can take the important findings presented here to the next level of discovery. Research articles must be declared as belonging to a relevant section. More information about the sections can be found in the submission guidelines. Research articles should model aspects of biological systems, demonstrate both methodological and scientific novelty, and provide profound new biological insights. Generally, reliability and significance of biological discovery through computation should be validated and enriched by experimental studies. Inclusion of experimental validation is not required for publication, but should be referenced where possible. Inclusion of experimental validation of a modest biological discovery through computation does not render a manuscript suitable for PLOS Computational Biology. Research articles specifically designated as Methods papers should describe outstanding methods of exceptional importance that have been shown, or have the promise to provide new biological insights. The method must already be widely adopted, or have the promise of wide adoption by a broad community of users. Enhancements to existing published methods will only be considered if those enhancements bring exceptional new capabilities.
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